{"id":"W4389334803","doi":"10.1097/ju9.0000000000000082","title":"Microbiomes in Post–Digital Rectal Exam Urine Samples are Linked to Prostate Cancer Risk","year":2023,"lang":"en","type":"article","venue":"JU Open Plus","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Prostate cancer; Urine; Incidence (geometry); Internal medicine; Microbiome; Gastroenterology; Rectal examination; Relative species abundance; Medicine; Biology; Cancer; Abundance (ecology); Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001797081,0.0001638209,0.0002196274,0.0001012145,0.00008897959,0.0001406738,0.0003581216,0.0001147376,0.00004546842],"category_scores_gemma":[0.00008428101,0.0001532653,0.00004962506,0.0003127193,0.00003093257,0.00001107955,0.0005944303,0.0001168811,0.0001844873],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000642415,"about_ca_system_score_gemma":0.000273013,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002611781,"about_ca_topic_score_gemma":0.00590634,"domain_scores_codex":[0.9988034,0.00003987013,0.0002325658,0.0004570177,0.00005854875,0.0004085786],"domain_scores_gemma":[0.9994205,0.00001233576,0.00008946662,0.0002876185,0.00006996374,0.0001201573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005105474,0.00007134724,0.0407184,0.00006241541,0.00005650943,0.00003593062,0.0007433807,0.0001693284,0.9080989,0.000005345138,0.04090616,0.008621689],"study_design_scores_gemma":[0.002388973,0.0004921523,0.6663106,0.0001399011,0.00001627902,0.0000245695,0.0008164317,0.00001891285,0.03005731,0.00002866962,0.2991246,0.0005815908],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956236,0.000290828,0.000004118859,0.001425233,0.0001919937,0.0007821398,0.001221637,0.00002357118,0.0004368182],"genre_scores_gemma":[0.9885041,0.0006397532,0.0002538465,0.0007910338,0.0001453906,0.000102344,0.0009280398,0.00003772573,0.008597801],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8780416,"threshold_uncertainty_score":0.6249976,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02153575806500252,"score_gpt":0.3114904704458544,"score_spread":0.2899547123808519,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}