{"id":"W4389334803","doi":"10.1097/ju9.0000000000000082","title":"Microbiomes in Post–Digital Rectal Exam Urine Samples are Linked to Prostate Cancer Risk","year":2023,"lang":"en","type":"article","venue":"JU Open Plus","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Prostate cancer; Urine; Incidence (geometry); Internal medicine; Microbiome; Gastroenterology; Rectal examination; Relative species abundance; Medicine; Biology; Cancer; Abundance (ecology); Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002369165,0.0001670035,0.0002197249,0.0009202575,0.0002552811,0.0005483844,0.0001463264,0.0002831128,0.00151577],"category_scores_gemma":[0.001252837,0.0001448316,0.000190066,0.0008518987,0.0002020452,0.0002181926,0.0004093596,0.0002569859,0.0001359263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001538615,"about_ca_system_score_gemma":0.000119454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001248672,"about_ca_topic_score_gemma":0.001313076,"domain_scores_codex":[0.9996308,0.00007935787,0.00003746399,0.00009271401,0.00009280424,0.00006684374],"domain_scores_gemma":[0.9989063,0.0001534584,0.0006230141,0.00004375483,0.0001181953,0.0001552282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000232975,0.00003069339,0.9899156,0.00003463526,0.00004402936,0.00006599373,0.00008332641,0.00003445432,0.005725095,0.00001224052,0.00007030438,0.003750663],"study_design_scores_gemma":[0.000001741396,0.00008263426,0.9982132,0.000007676615,0.00002023819,0.0003657274,0.0001457654,0.0001321289,0.0008457923,0.00001664279,0.0001656508,0.000002928295],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988268,0.000520809,0.0001198862,0.0000295234,0.000004063273,0.000004741902,0.0002554529,0.000005325406,0.0002335526],"genre_scores_gemma":[0.9995259,0.00009079407,0.0001378792,0.00001162807,0.000004437888,0.00000288239,0.0001451741,0.000001027544,0.00008029492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00151577,"threshold_uncertainty_score":0.005070746,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02153575806500252,"score_gpt":0.3114904704458544,"score_spread":0.2899547123808519,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}