{"id":"W4389508917","doi":"10.1186/s12890-023-02802-z","title":"Strain structure analysis of Mycobacterium tuberculosis circulating among HIV negative, positive and drug resistant TB patients attending chest clinics in Western Kenya","year":2023,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Universiteit Stellenbosch","keywords":"Medicine; Tuberculosis; Mycobacterium tuberculosis; Logistic regression; Internal medicine; Lineage (genetic); Beijing; Cross-sectional study; Public health; Isoniazid; Veterinary medicine; Pathology; Genetics; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002438315,0.0002565976,0.0001837646,0.000878653,0.0007583209,0.0004533968,0.0003014673,0.0004397346,0.001214291],"category_scores_gemma":[0.001017737,0.000280293,0.0001503264,0.0007281201,0.000324302,0.0002827551,0.000308893,0.0002976036,0.00023284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003960548,"about_ca_system_score_gemma":0.0003595058,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01388618,"about_ca_topic_score_gemma":0.02340418,"domain_scores_codex":[0.9997428,0.00005750968,0.00003800194,0.0000609628,0.00004040296,0.00006025492],"domain_scores_gemma":[0.9996069,0.00005862916,0.0001753745,0.00001343794,0.00006628543,0.00007936657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004614598,0.0000263965,0.9972906,0.00001167316,0.000007450169,0.0001632646,0.000385627,0.00001781412,0.00130356,0.000008511062,0.00005166567,0.0006871991],"study_design_scores_gemma":[0.00000324011,0.0001056311,0.9982096,0.000009777057,0.000008512718,0.0005111941,0.0007981499,0.00008629404,0.0001490117,0.00000487238,0.0001114936,0.00000233117],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996349,0.00005568587,0.00001702044,0.00001185744,0.000001012549,0.0000102099,0.0001253132,6.204558e-7,0.0001434353],"genre_scores_gemma":[0.9995284,0.0000487895,0.00009919627,0.00001736078,0.000002038814,0.00001069311,0.0002058256,6.9615e-7,0.00008694061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01388618,"threshold_uncertainty_score":0.02761072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02626101281069336,"score_gpt":0.3225529860017655,"score_spread":0.2962919731910721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}