{"id":"W4389612983","doi":"10.1093/gbe/evad229","title":"Widespread Deviant Patterns of Heterozygosity in Whole-Genome Sequencing Due to Autopolyploidy, Repeated Elements, and Duplication","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Rimouski; Université Laval","funders":"Norges Miljø- og Biovitenskapelige Universitet; Genome Canada","keywords":"Biology; Single-nucleotide polymorphism; Genetics; Genome; Population; Genomics; Loss of heterozygosity; Evolutionary biology; Computational biology; Allele; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002133209,0.0003763475,0.0005261056,0.001380704,0.0004520702,0.0006302861,0.0003576493,0.0003553453,0.0003819362],"category_scores_gemma":[0.004027655,0.0002561974,0.0004329898,0.001743605,0.0005042732,0.0003551534,0.0006404305,0.0004389679,0.0001455698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003287911,"about_ca_system_score_gemma":0.0003092489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001870381,"about_ca_topic_score_gemma":0.006986645,"domain_scores_codex":[0.9984218,0.0003125149,0.0001606828,0.0006103418,0.0004022824,0.00009238074],"domain_scores_gemma":[0.9978398,0.000971642,0.0006011906,0.0002849929,0.0002416224,0.00006077954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003288305,0.00006868265,0.5058419,0.0004499351,0.001060411,0.000833946,0.00151837,0.005469561,0.4327665,0.001143272,0.0005333522,0.04998523],"study_design_scores_gemma":[0.00001932486,0.0001359314,0.9364489,0.00006097058,0.0003311834,0.001435379,0.0004060649,0.01702924,0.03867293,0.002400093,0.003010013,0.00005004911],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9732525,0.0006422577,0.02437223,0.00003311608,0.00001288452,0.00002243417,0.0007637703,0.0001787657,0.0007221462],"genre_scores_gemma":[0.9816351,0.0001720478,0.01568944,0.0001090538,0.000006039156,0.00003656478,0.002064595,0.00006348013,0.0002236684],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002133209,"threshold_uncertainty_score":0.01128161,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01457993686531019,"score_gpt":0.249069582054561,"score_spread":0.2344896451892508,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}