{"id":"W4389614854","doi":"10.3390/microorganisms11122972","title":"Draft Genome of Nocardia canadensis sp. nov. Isolated from Petroleum-Hydrocarbon-Contaminated Soil","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; King Saud University; Génome Québec; Genome Canada","keywords":"Biology; Genome; 16S ribosomal RNA; Whole genome sequencing; GC-content; Strain (injury); Nocardia; Gene; Genetics; Ribosomal RNA; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001077876,0.0002459147,0.0003385254,0.00008327792,0.00009623821,0.00001788831,0.0002778087,0.0001906366,0.00003931009],"category_scores_gemma":[0.00002530462,0.0002569347,0.000140884,0.0002347232,0.00009814593,7.72329e-7,0.0002610158,0.00008922433,0.0000803807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002614531,"about_ca_system_score_gemma":0.0001045681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002073233,"about_ca_topic_score_gemma":0.00112699,"domain_scores_codex":[0.9986656,0.00004164213,0.000317619,0.0004627248,0.0001204162,0.0003920164],"domain_scores_gemma":[0.9992076,0.00001775616,0.0001156653,0.0004611576,0.0001011931,0.00009662507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003349546,0.00002059573,0.003921088,0.000009733312,0.0003242209,0.00001446293,0.0002860426,0.000128967,0.9941975,0.000003895054,0.0009036732,0.0001562613],"study_design_scores_gemma":[0.0007270753,0.0001736721,0.07914098,0.000009845065,0.00008893508,0.000009094301,0.0003134319,0.0001005067,0.9079149,0.0000608113,0.01110857,0.0003521225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966372,0.001778329,0.00012392,0.0001589544,0.0002874981,0.0001273934,0.0003411417,0.00001949249,0.000526028],"genre_scores_gemma":[0.9976411,0.0004617825,0.0001754187,0.0001845284,0.0001717558,0.00000910483,0.0004289441,0.00005952038,0.0008678187],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08628262,"threshold_uncertainty_score":0.9999883,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005527429604105558,"score_gpt":0.1919088104446038,"score_spread":0.1863813808404982,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}