{"id":"W4389688166","doi":"10.1016/j.chom.2023.11.009","title":"It takes a plant village to raise a microbiome","year":2023,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Banting Research Foundation","keywords":"Biology; Microbiome; Host (biology); Phyllosphere; Inheritance (genetic algorithm); Transmission (telecommunications); Evolutionary biology; Ecology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001286508,0.0001674642,0.0001832551,0.00002900822,0.0002091645,0.00008168165,0.0003508723,0.00009201055,0.0003512391],"category_scores_gemma":[0.0000103135,0.00006718055,0.00008807147,0.0006307584,0.00003978355,0.0000513286,0.00008204277,0.000078252,0.003820449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001713072,"about_ca_system_score_gemma":0.000007925946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008557538,"about_ca_topic_score_gemma":0.0005927288,"domain_scores_codex":[0.998849,0.00003241803,0.0001768398,0.0003651379,0.0001037909,0.0004728131],"domain_scores_gemma":[0.9995929,0.0001027609,0.0000471389,0.00007450155,0.00002306612,0.0001596351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002085872,0.00002859563,0.0002672572,0.00001078127,0.00000329228,0.00009107838,0.0001546666,0.000001137992,0.8242052,0.000004968457,0.1747066,0.0005056295],"study_design_scores_gemma":[0.0001190945,0.00006906113,0.02864855,0.00005184848,0.000005779985,0.00002874594,0.0002559801,0.000002981965,0.2274725,0.00000542978,0.7430865,0.0002535477],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891667,0.0003212252,0.000001952196,0.00309714,0.0002333407,0.0002283881,0.001414744,0.0001711677,0.005365284],"genre_scores_gemma":[0.9767471,0.0002066764,0.00008570695,0.002464841,0.0002240516,0.00001905942,0.0006583233,0.000002628007,0.0195916],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5967327,"threshold_uncertainty_score":0.9969552,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01321691179249827,"score_gpt":0.2077822168684685,"score_spread":0.1945653050759702,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}