{"id":"W4389947174","doi":"10.1101/2023.12.18.572160","title":"Understanding Genome Structure Facilitates the Use of Wild Lentil Germplasm for Breeding: A Case Study with Shattering Loci","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic and Environmental Crop Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Saskatchewan Pulse Growers; Genome Prairie; Western Grains Research Foundation; Genome Canada","keywords":"Biology; Introgression; Germplasm; Quantitative trait locus; Genetics; Heritability; Population; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006209417,0.0003157026,0.0002177181,0.0004355,0.000291329,0.0006549666,0.0004398855,0.000402751,0.0008799893],"category_scores_gemma":[0.0005733914,0.00007027604,0.0002326604,0.0004046305,0.000300179,0.0004330598,0.0004038147,0.0004957311,0.000151994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005137645,"about_ca_system_score_gemma":0.0002683439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003505818,"about_ca_topic_score_gemma":0.006607955,"domain_scores_codex":[0.9998623,0.00004578567,0.000007756942,0.00003615191,0.00002810676,0.00001988959],"domain_scores_gemma":[0.9996777,0.0001239786,0.0000488761,0.00006959094,0.00004060454,0.00003933561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000438617,0.0006752465,0.0910646,0.0004182517,0.0001243029,0.008268447,0.001832405,0.005769051,0.7434956,0.003274227,0.0007828624,0.1438563],"study_design_scores_gemma":[0.00009166095,0.001163649,0.6221914,0.0002094619,0.0003256796,0.01499378,0.002315829,0.03814107,0.2655473,0.005270128,0.04958066,0.0001694027],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9810216,0.001305631,0.01430448,0.0002444329,0.000006906743,0.00005974413,0.0004273694,0.0001409585,0.002488827],"genre_scores_gemma":[0.9701446,0.0007135473,0.02647985,0.0001206395,0.00000940136,0.00001917062,0.0006850074,0.00006075155,0.001767089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003505818,"threshold_uncertainty_score":0.006970823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1362752817699779,"score_gpt":0.2246810712313797,"score_spread":0.08840578946140179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}