{"id":"W4389947533","doi":"10.1101/2023.12.17.572044","title":"Nationwide genome surveillance of carbapenem-resistant <i>Pseudomonas aeruginosa</i> in Japan","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Research Organization of Information and Systems","keywords":"Pseudomonas aeruginosa; Biology; Meropenem; Amikacin; Antibiotic resistance; Genotype; Piperacillin; Whole genome sequencing; Microbiology; Genetics; Efflux; Carbapenem; Ciprofloxacin; Gene; Genome; Antimicrobial; Antibiotics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003229546,0.0003164861,0.0002557964,0.001203358,0.0004115088,0.0004949069,0.0003266603,0.0003372152,0.0006350484],"category_scores_gemma":[0.0006056787,0.0002534718,0.000351051,0.001384712,0.0001598337,0.0002931154,0.0005708275,0.0002606987,0.0001589705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005290487,"about_ca_system_score_gemma":0.0007073335,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0457128,"about_ca_topic_score_gemma":0.04216516,"domain_scores_codex":[0.9996785,0.00004856919,0.00004531691,0.000100504,0.00006111476,0.00006604314],"domain_scores_gemma":[0.9991504,0.00003804928,0.000269056,0.00004444336,0.0003254607,0.0001726831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004335985,0.00001865594,0.9873747,0.00008292386,0.00005482856,0.0002351007,0.0003249171,0.00006006552,0.007554434,0.00001668369,0.0006366642,0.003597738],"study_design_scores_gemma":[0.000002678026,0.00003176523,0.9977152,0.00001053808,0.00003984002,0.000228071,0.0004591604,0.0001528397,0.0003181114,0.000004703925,0.00103367,0.000003376086],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958093,0.0004548522,0.0002608728,0.00008611922,0.00000864423,0.00002475075,0.002806829,0.00001446245,0.0005341622],"genre_scores_gemma":[0.9938973,0.0004576432,0.0008184588,0.000173595,0.00001584437,0.00003553332,0.004235274,0.000007886204,0.0003585479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0457128,"threshold_uncertainty_score":0.09089345,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01152709199588794,"score_gpt":0.2226200789196835,"score_spread":0.2110929869237955,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}