{"id":"W4389994046","doi":"10.1158/1055-9965.epi-23-0652","title":"The Salivary Microbiome and Predicted Metabolite Production Are Associated with Barrett's Esophagus and High-Grade Dysplasia or Adenocarcinoma","year":2023,"lang":"en","type":"article","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Esophageal Cancer Research and Treatment","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre for Global Health Research","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; Columbia University; Canadian Institute for Advanced Research; U.S. Department of Defense","keywords":"Microbiome; Dysbiosis; Dysplasia; Oral Microbiome; Gastroenterology; Internal medicine; Barrett's esophagus; Saliva; Metabolite; Biology; Physiology; Medicine; Adenocarcinoma; Bioinformatics; Cancer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003338079,0.0003033885,0.0003263179,0.0004614306,0.000221459,0.0006293881,0.000135708,0.000301704,0.002612507],"category_scores_gemma":[0.001356996,0.000136253,0.0004952255,0.000643924,0.0001457484,0.0002125653,0.0004868971,0.0002570459,0.0003390685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002636548,"about_ca_system_score_gemma":0.0002417124,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001679658,"about_ca_topic_score_gemma":0.002490232,"domain_scores_codex":[0.9998077,0.0000665062,0.00002209209,0.00003868765,0.00004123407,0.00002383063],"domain_scores_gemma":[0.9995658,0.000116865,0.0002025342,0.00002698203,0.00003964721,0.00004813981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002594913,0.00002289054,0.9927093,0.00003826377,0.00006700588,0.0000581802,0.00002090071,0.0003520755,0.001483948,0.00001427454,0.00006838547,0.004905197],"study_design_scores_gemma":[0.000005686461,0.0001561634,0.9945368,0.00002386528,0.00008825958,0.0004359899,0.0001622924,0.003483868,0.0006451177,0.0000890535,0.0003675218,0.000005326283],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978885,0.0007676426,0.0004193461,0.00005587539,0.000004609909,0.000006116288,0.0004683241,0.00001205698,0.0003774923],"genre_scores_gemma":[0.9988974,0.0001678073,0.0004752481,0.0000117972,0.000002961831,0.000003892348,0.0003524958,0.00000226795,0.00008609341],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002612507,"threshold_uncertainty_score":0.00873971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05021266999189854,"score_gpt":0.3463611167769005,"score_spread":0.296148446785002,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}