{"id":"W4390033824","doi":"10.1139/gen-2022-0092","title":"Mitogenome evolution in <i>Trichoderma afroharzianum</i> strains: for a better understanding of distinguishing genus","year":2023,"lang":"en","type":"article","venue":"Genome","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Hypocreales; Phylogenetics; Genome; Genetics; Phylogenetic tree; Trichoderma; Intron; Sister group; Mitochondrial DNA; Hypocrea; Genome size; Ribosomal RNA; Gene; Evolutionary biology; Botany; Clade; Ascomycota; Trichoderma reesei","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001298008,0.000296905,0.000195875,0.0006460819,0.000208451,0.0003399662,0.0001578096,0.0003336466,0.001038754],"category_scores_gemma":[0.0003789855,0.0001050338,0.0003142462,0.0005765801,0.0001331793,0.0002292358,0.000239382,0.0002992275,0.0003351744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001722761,"about_ca_system_score_gemma":0.0001220618,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008673138,"about_ca_topic_score_gemma":0.001130698,"domain_scores_codex":[0.9998957,0.00001044363,0.00001007049,0.00004138675,0.00002232226,0.00002012721],"domain_scores_gemma":[0.9996932,0.00006300248,0.0001219932,0.00002103166,0.00005960286,0.00004116386],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001381375,0.00001543027,0.01037044,0.00007408184,0.00001671637,0.00007753277,0.0001296632,0.00006034757,0.9844819,0.00003391089,0.00003177053,0.004570117],"study_design_scores_gemma":[0.0000321488,0.0005673171,0.7444487,0.00005847547,0.0001942511,0.00249636,0.0008027613,0.002316646,0.2385817,0.0003177762,0.01013241,0.00005141971],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968269,0.0004145184,0.001260466,0.00004309003,0.000008827063,0.00001457337,0.0008777494,0.00002772135,0.000526123],"genre_scores_gemma":[0.9904032,0.0004726756,0.003544964,0.00006268819,0.00001609757,0.00004806975,0.00441021,0.00003241748,0.001009761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001038754,"threshold_uncertainty_score":0.00347501,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03696358147435922,"score_gpt":0.2553869161309087,"score_spread":0.2184233346565495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}