{"id":"W4390042652","doi":"10.1093/g3journal/jkad283","title":"A high-quality reference genome for the common creek chub, <i>Semotilus atromaculatus</i>","year":2023,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Alliance de recherche numérique du Canada; Canada First Research Excellence Fund","keywords":"Biology; Minnow; Synteny; Genome; Contig; Sequence assembly; Reference genome; Evolutionary biology; Computational biology; Genetics; Fishery; Fish <Actinopterygii>; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004658781,0.0005495512,0.0005279837,0.001474663,0.001181965,0.0007688737,0.0007058803,0.0008214971,0.004635699],"category_scores_gemma":[0.001130782,0.0002972641,0.0006492501,0.002115026,0.0002513138,0.0004648724,0.0006032892,0.0008280732,0.002296398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009516834,"about_ca_system_score_gemma":0.00164961,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0145573,"about_ca_topic_score_gemma":0.02570799,"domain_scores_codex":[0.9995442,0.0000371649,0.00002801937,0.0001733441,0.0001699048,0.00004733206],"domain_scores_gemma":[0.999463,0.00006848347,0.0001107273,0.00007188762,0.0002333363,0.00005260504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005975742,0.0000879412,0.0086982,0.0007958281,0.0000844419,0.0004813819,0.0005276552,0.001658432,0.9240318,0.001246833,0.009166196,0.05262365],"study_design_scores_gemma":[0.0001418743,0.0006944651,0.26715,0.0004490482,0.0005156013,0.003040086,0.0007710975,0.01106639,0.3483467,0.001171061,0.3664684,0.0001852852],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6490139,0.003802145,0.1220584,0.0008588984,0.0003462031,0.0005355501,0.1982564,0.004768081,0.02036032],"genre_scores_gemma":[0.2718513,0.001635665,0.195395,0.0003374527,0.00005925538,0.0004757768,0.5170009,0.001917853,0.01132697],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0145573,"threshold_uncertainty_score":0.02894515,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04244091806322299,"score_gpt":0.2962567283078877,"score_spread":0.2538158102446647,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}