{"id":"W4390042996","doi":"10.1016/j.neo.2023.100957","title":"Immune infiltration, aggressive pathology, and poor survival outcomes in RECQL helicase deficient breast cancers","year":2023,"lang":"en","type":"article","venue":"Neoplasia","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Women's College Hospital; University of Toronto","funders":"","keywords":"Breast cancer; FOXP3; Cancer research; Infiltration (HVAC); Immune system; Pathology; Biology; Ductal carcinoma; CD8; Oncology; Medicine; Cancer; Internal medicine; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002185696,0.0001413016,0.0001787034,0.00008080182,0.00005603148,0.00001831246,0.0001030074,0.0001437675,0.00001391194],"category_scores_gemma":[0.0001391603,0.0001339556,0.00004829981,0.0001716329,0.00006566974,0.000004100896,0.000118129,0.00008602689,0.00002768873],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002894521,"about_ca_system_score_gemma":0.00009344974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001295564,"about_ca_topic_score_gemma":0.0007627218,"domain_scores_codex":[0.9990082,0.00007503087,0.0002038379,0.0003431782,0.0001074374,0.000262266],"domain_scores_gemma":[0.9995215,0.00002308092,0.00009741319,0.0002489323,0.00004540464,0.00006367535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001395506,0.0000590284,0.07302386,0.00002631254,0.0000456284,0.0004058783,0.0002783648,0.000190793,0.9182257,0.0003059647,0.0008765776,0.006422311],"study_design_scores_gemma":[0.004249472,0.0007981798,0.5587468,0.0001019797,0.00005139194,0.002035085,0.002076502,0.000769432,0.423944,0.0004651145,0.00577707,0.000985013],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982885,0.0002882897,0.00003942649,0.0004131153,0.0003248112,0.0001789732,0.00007514675,0.00003773778,0.0003540491],"genre_scores_gemma":[0.9987307,0.0002379612,0.0001820395,0.0001534526,0.00004345601,0.00005301843,0.0001453783,0.0000198878,0.0004341623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4942818,"threshold_uncertainty_score":0.546255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00874727026001983,"score_gpt":0.2534186005582093,"score_spread":0.2446713302981895,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}