{"id":"W4390042996","doi":"10.1016/j.neo.2023.100957","title":"Immune infiltration, aggressive pathology, and poor survival outcomes in RECQL helicase deficient breast cancers","year":2023,"lang":"en","type":"article","venue":"Neoplasia","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Women's College Hospital; University of Toronto","funders":"","keywords":"Breast cancer; FOXP3; Cancer research; Infiltration (HVAC); Immune system; Pathology; Biology; Ductal carcinoma; CD8; Oncology; Medicine; Cancer; Internal medicine; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001195833,0.0001586175,0.0001463255,0.0003531831,0.0001509571,0.0002254752,0.00007296294,0.0001489184,0.0007406361],"category_scores_gemma":[0.0002072658,0.00007398079,0.00008462297,0.0001364682,0.0001480708,0.0001172816,0.0001836593,0.0001488348,0.0001038221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001207673,"about_ca_system_score_gemma":0.00007301834,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004632165,"about_ca_topic_score_gemma":0.0006059692,"domain_scores_codex":[0.9999437,0.000008971667,0.000004953534,0.00001320037,0.00001281493,0.00001625462],"domain_scores_gemma":[0.9997962,0.00002547323,0.00009006677,0.00001369449,0.00001596784,0.00005853076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001574642,0.00007087406,0.8425483,0.00003131161,0.00004324519,0.0009169147,0.000171095,0.0001153388,0.1454993,0.00004920425,0.00009387461,0.008885891],"study_design_scores_gemma":[0.000008569001,0.0003053266,0.9873708,0.000005021249,0.00002980602,0.002879541,0.0001459306,0.0001650123,0.008613191,0.00003499403,0.0004380234,0.000003772729],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997063,0.00011915,0.00004189999,0.000005007997,5.804308e-7,9.909344e-7,0.00003176319,0.00000231913,0.00009189457],"genre_scores_gemma":[0.9997199,0.00004918641,0.00003957304,0.000004453998,0.000001256557,0.000001404796,0.00005694748,9.720409e-7,0.000126223],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007406361,"threshold_uncertainty_score":0.002477705,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00874727026001983,"score_gpt":0.2534186005582093,"score_spread":0.2446713302981895,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}