{"id":"W4390174665","doi":"10.3390/genes15010027","title":"The Mutational Spectrum of Pre- and Post-Neoadjuvant Chemotherapy Triple-Negative Breast Cancers","year":2023,"lang":"en","type":"article","venue":"Genes","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hôpital du Sacré-Cœur de Montréal; McGill University Health Centre; McGill University; Jewish General Hospital","funders":"Fonds de Recherche du Québec - Santé; Jewish General Hospital; Fondation de l'Hôpital général juif; Fondation du cancer du sein du Québec; Université de Montréal; McGill University Health Centre; McGill University","keywords":"Chemotherapy; Triple-negative breast cancer; Cancer research; Biology; Exome sequencing; Breast cancer; Mutation; Gene; Cancer; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008824686,0.0001051194,0.0001380345,0.0005693055,0.0001621959,0.0001889925,0.0000836879,0.0001910278,0.001097239],"category_scores_gemma":[0.0004272103,0.00006332448,0.00007521556,0.0002554045,0.0001215344,0.00008031914,0.0001107325,0.0001215427,0.000175489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001308897,"about_ca_system_score_gemma":0.00006282512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006013807,"about_ca_topic_score_gemma":0.001087114,"domain_scores_codex":[0.9999094,0.00001056706,0.00001102778,0.00002575749,0.00002410296,0.0000190764],"domain_scores_gemma":[0.999868,0.00003538653,0.00003792332,0.00001188172,0.00001800846,0.00002874088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001383712,0.00008013604,0.6091949,0.00005504314,0.00004379554,0.001859659,0.000402334,0.0002613514,0.3684631,0.0001230894,0.0001560305,0.01797689],"study_design_scores_gemma":[0.000005042044,0.0001711449,0.9866391,0.000004138645,0.00001977281,0.003380561,0.0001242359,0.000163425,0.009023781,0.00004466691,0.0004208561,0.000003340845],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994422,0.0001358257,0.00004737085,0.000007444407,9.45e-7,0.000002161565,0.0001109524,0.000002379267,0.0002506169],"genre_scores_gemma":[0.9993647,0.0000880761,0.00006627853,0.000009916795,0.000001861398,0.000005930201,0.0002481555,0.000002385792,0.0002127966],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001097239,"threshold_uncertainty_score":0.003670633,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005006618799814047,"score_gpt":0.2392760920925573,"score_spread":0.2342694732927433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}