{"id":"W4390272687","doi":"10.3390/microorganisms12010048","title":"High-Throughput Short Sequence Typing Schemes for Pseudomonas aeruginosa and Stenotrophomonas maltophilia Pure Culture and Environmental DNA","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Polytechnique Montréal; Centre Hospitalier Universitaire Sainte-Justine; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Aix-Marseille Université; California HIV/AIDS Research Program","keywords":"Stenotrophomonas maltophilia; Biology; Typing; Pseudomonas aeruginosa; Multilocus sequence typing; Computational biology; Genotyping; Amplicon; Multiple Loci VNTR Analysis; Microbiology; Genetics; Polymerase chain reaction; Gene; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007186425,0.0001664398,0.0001357326,0.00002336759,0.0002236323,0.00005258252,0.00007616783,0.0001561047,0.00001312034],"category_scores_gemma":[0.00001643911,0.0001551483,0.00003947287,0.00006152276,0.0001269818,0.000008504558,0.0001235761,0.00006234901,0.000007357115],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002008075,"about_ca_system_score_gemma":0.00002071354,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005809623,"about_ca_topic_score_gemma":0.00001098025,"domain_scores_codex":[0.9991716,0.00001523664,0.0001298108,0.0003893723,0.00005135188,0.0002426291],"domain_scores_gemma":[0.9997119,0.000006465492,0.00003227689,0.000171124,0.00001852165,0.00005966679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003891033,0.00001425419,0.0008186775,0.00002956682,0.00002909436,0.000004196575,0.00005148613,9.896293e-7,0.9966142,0.0002222083,0.0007343799,0.001442036],"study_design_scores_gemma":[0.0003645413,0.0001733937,0.003754113,0.000013936,0.00002261742,0.0000532907,0.0001289222,0.000006442232,0.8997582,0.000168543,0.0953311,0.0002248986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980541,0.0005616357,0.0005858564,0.0001249588,0.0001857087,0.000240793,0.0001962911,0.00002715715,0.00002344918],"genre_scores_gemma":[0.9945105,0.001146768,0.002072638,0.0001366476,0.0002386542,0.00002742285,0.0004750284,0.00002903948,0.0013633],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.096856,"threshold_uncertainty_score":0.6326765,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008921286355361529,"score_gpt":0.2298626092060262,"score_spread":0.2209413228506647,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}