{"id":"W4390272687","doi":"10.3390/microorganisms12010048","title":"High-Throughput Short Sequence Typing Schemes for Pseudomonas aeruginosa and Stenotrophomonas maltophilia Pure Culture and Environmental DNA","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Polytechnique Montréal; Centre Hospitalier Universitaire Sainte-Justine; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Aix-Marseille Université; California HIV/AIDS Research Program","keywords":"Stenotrophomonas maltophilia; Biology; Typing; Pseudomonas aeruginosa; Multilocus sequence typing; Computational biology; Genotyping; Amplicon; Multiple Loci VNTR Analysis; Microbiology; Genetics; Polymerase chain reaction; Gene; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002781421,0.0007538986,0.0007069632,0.001567996,0.0004735978,0.001106123,0.0008696375,0.0007449041,0.0009713072],"category_scores_gemma":[0.005032455,0.0004037609,0.001125226,0.001236223,0.0004596848,0.000594661,0.0007682812,0.0007696717,0.001420954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004411131,"about_ca_system_score_gemma":0.0006093372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001314765,"about_ca_topic_score_gemma":0.003135042,"domain_scores_codex":[0.9961365,0.001217582,0.0003603118,0.0006560317,0.001431712,0.0001978848],"domain_scores_gemma":[0.9961117,0.000876862,0.001059795,0.0007759785,0.0009740305,0.0002015902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006256901,0.0001783017,0.01036541,0.0002956031,0.00009597791,0.00008381366,0.0002535435,0.002574153,0.9440696,0.0005115476,0.0005345784,0.04041171],"study_design_scores_gemma":[0.00003086018,0.0008481932,0.02100417,0.00003781213,0.0001392061,0.0005159326,0.0001540004,0.01617447,0.9521595,0.0003525274,0.008497886,0.00008552603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5643429,0.001152642,0.4190512,0.0003143815,0.0001178947,0.001379355,0.008435939,0.003092906,0.002112841],"genre_scores_gemma":[0.4438525,0.0009015435,0.5333353,0.0001743813,0.00004962563,0.001293184,0.01564502,0.0002748721,0.004473509],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002781421,"threshold_uncertainty_score":0.01470971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008921286355361529,"score_gpt":0.2298626092060262,"score_spread":0.2209413228506647,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}