{"id":"W4390393281","doi":"10.1101/2023.12.28.23300451","title":"Signatures of transmission in within-host <i>M. tuberculosis</i> variation","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Variation (astronomy); Host (biology); Transmission (telecommunications); Computer science; Biology; Telecommunications; Physics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006826887,0.0003939806,0.0005730272,0.001558946,0.0005117176,0.002319992,0.0006954048,0.000853645,0.001494224],"category_scores_gemma":[0.01428839,0.0003222199,0.001158219,0.00132965,0.0006982617,0.001067112,0.001081224,0.0009833018,0.0003392673],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005870549,"about_ca_system_score_gemma":0.0003585625,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003178568,"about_ca_topic_score_gemma":0.003829419,"domain_scores_codex":[0.9957098,0.002341311,0.0003108308,0.001027082,0.000317834,0.0002930955],"domain_scores_gemma":[0.9867266,0.007721383,0.002921987,0.00144831,0.0008644561,0.0003173101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003930322,0.00004651591,0.9716113,0.0002142981,0.001305946,0.0002451849,0.0003892238,0.003186548,0.007774943,0.0006555289,0.0007302026,0.01344744],"study_design_scores_gemma":[0.00004615923,0.0002188429,0.9493399,0.0002935256,0.001042785,0.00151128,0.001110836,0.03400939,0.004998224,0.004184884,0.003184762,0.00005943207],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891697,0.002055353,0.005901995,0.0003135723,0.00002180348,0.00001890697,0.0009299599,0.0001040389,0.00148473],"genre_scores_gemma":[0.9982657,0.0001148749,0.001036394,0.00007043771,0.00001240155,0.000006745496,0.000431399,0.00001873955,0.00004345953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006826887,"threshold_uncertainty_score":0.0361045,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03887683968481322,"score_gpt":0.3334738749166566,"score_spread":0.2945970352318434,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}