{"id":"W4390404864","doi":"10.3390/microorganisms12010064","title":"Genomics of Re-Emergent Aeromonas salmonicida in Atlantic Salmon Outbreaks","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Aeromonas salmonicida; Biology; Psychrophile; Virulence; Salmo; Antibiotic resistance; Microbiology; Plasmid; Genetics; Aeromonas; Comparative genomics; Genome; Genomics; Population; Gene; Antibiotics; Bacteria; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002502032,0.00025302,0.000389865,0.0002756553,0.00008477965,0.00001176892,0.0003947251,0.0002387905,0.001041876],"category_scores_gemma":[0.00002529953,0.0002392988,0.0001404501,0.0005525679,0.0001261353,0.00005473615,0.0002840596,0.0002128673,0.003185632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009787719,"about_ca_system_score_gemma":0.00004757076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004333515,"about_ca_topic_score_gemma":0.0003208292,"domain_scores_codex":[0.9984366,0.00009340861,0.0004999765,0.0004065642,0.00003957975,0.0005238428],"domain_scores_gemma":[0.9993581,0.00003618359,0.0001490541,0.0003879533,0.00004061526,0.00002814864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006692783,0.0001358696,0.007497629,0.00005068379,0.0001215515,0.00003442569,0.001168543,0.00001332207,0.9650513,0.0003490432,0.02502928,0.0004814314],"study_design_scores_gemma":[0.001808675,0.0001006546,0.05264044,0.00006534452,0.000108446,0.00001720833,0.001634175,0.0000038694,0.849004,0.0001794212,0.09400289,0.0004349145],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996103,0.001077084,0.00002463261,0.0004213956,0.0005700621,0.0003739865,0.00005570608,0.0001516637,0.001222474],"genre_scores_gemma":[0.9940529,0.0002533889,0.00006344477,0.0001359142,0.0000246469,0.00001189106,0.0008031453,0.00004363489,0.004611041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1160473,"threshold_uncertainty_score":0.9998713,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01302180694246569,"score_gpt":0.2325282020129008,"score_spread":0.2195063950704352,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}