{"id":"W4390442429","doi":"10.1101/2023.12.30.573697","title":"RepeatOBserver: tandem repeat visualization and centromere detection","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"","keywords":"Centromere; Tandem repeat; Biology; Genome; Transposable element; Retrotransposon; Genetics; Chromosome; Interspersed repeat; Segmental duplication; Repeated sequence; Computational biology; Human genome; Evolutionary biology; Gene; Gene family","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009052404,0.0008435007,0.0005125487,0.002036702,0.0004005492,0.0009215921,0.001042091,0.001068488,0.008382344],"category_scores_gemma":[0.002462626,0.0005024325,0.0007467627,0.001127158,0.0002470265,0.001172738,0.001585006,0.001088099,0.003081005],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002255099,"about_ca_system_score_gemma":0.0002920731,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008130721,"about_ca_topic_score_gemma":0.001315716,"domain_scores_codex":[0.9994928,0.00008069043,0.00002920876,0.000149779,0.0001851272,0.00006235457],"domain_scores_gemma":[0.9990931,0.0003395347,0.0001436625,0.0001628376,0.0001578608,0.0001031163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008804846,0.0001998438,0.01208474,0.001068011,0.0003087099,0.0007823891,0.0009357629,0.007634099,0.6048495,0.007548024,0.06792139,0.2957872],"study_design_scores_gemma":[0.0001611356,0.0002465049,0.02270704,0.000236931,0.0001043669,0.002096116,0.0003784219,0.2965203,0.5772902,0.01270308,0.08721545,0.0003403967],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.09938161,0.0007752442,0.7546709,0.0003189104,0.0001442348,0.0001306698,0.008601708,0.1313321,0.004644619],"genre_scores_gemma":[0.249008,0.0003555948,0.7220818,0.0002311129,0.00005466384,0.000379422,0.01253631,0.01064969,0.004703427],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.008382344,"threshold_uncertainty_score":0.02804178,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02220363441535825,"score_gpt":0.2143934147024341,"score_spread":0.1921897802870758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}