{"id":"W4390542439","doi":"10.3389/fgene.2023.1246904","title":"Mapping yield and yield-related traits using diverse common bean germplasm","year":2024,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Guelph","funders":"Canada First Research Excellence Fund","keywords":"Germplasm; Biology; Single-nucleotide polymorphism; Quantitative trait locus; Genetics; Genome-wide association study; Trait; Genotype; Gene; Association mapping; Candidate gene; Genome; Horticulture","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001192178,0.0001159719,0.0001538505,0.00003419027,0.0001127403,0.00006826362,0.0001107393,0.0001374891,0.00003486843],"category_scores_gemma":[0.000008494595,0.00005296976,0.00004392801,0.0002677303,0.000041789,0.00003997339,0.00005376591,0.0001395496,0.000002539544],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002381528,"about_ca_system_score_gemma":0.000005590795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003666343,"about_ca_topic_score_gemma":0.000355906,"domain_scores_codex":[0.9992278,0.00002131451,0.0001692252,0.0002432456,0.0001076026,0.0002307944],"domain_scores_gemma":[0.9998188,0.00005284611,0.00002688664,0.0000287615,0.000008535978,0.00006418165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001011543,0.00002411929,0.01375938,0.00003428223,0.00002940829,0.0001677431,0.0004345486,0.0001256868,0.8604375,0.00009499621,0.001696898,0.1231853],"study_design_scores_gemma":[0.0007620805,0.0007795031,0.6832038,0.002955655,0.0002277193,0.0004078778,0.0177009,0.1562533,0.03112606,0.01742418,0.08624596,0.002912954],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931982,0.004892818,0.0003694101,0.0001281427,0.000821099,0.0001220292,0.00008599527,0.00004330273,0.0003390043],"genre_scores_gemma":[0.9964828,0.000720122,0.002400723,0.0000562527,0.00008152937,0.00000190942,0.00001013885,0.000001573827,0.0002449678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8293115,"threshold_uncertainty_score":0.2160044,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02890179951334829,"score_gpt":0.2089367047252424,"score_spread":0.1800349052118941,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}