{"id":"W4390578629","doi":"10.1099/mgen.0.001169","title":"Complete genomes of Clostridium botulinum type B(F) isolates associated with a 1995 foodborne botulism outbreak from commercial pâté reveals a recombination event disrupting the ntnh gene","year":2024,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada","funders":"Health Canada","keywords":"Botulism; Clostridium botulinum; Biology; Plasmid; Microbiology; Gene; Genome; Food poisoning; Outbreak; Genetics; Virology; Toxin","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003843044,0.0003451943,0.000623709,0.0001060994,0.0001971354,0.00007404086,0.0002646151,0.0003432949,0.0001149816],"category_scores_gemma":[0.0001258272,0.0002305967,0.0002516967,0.0005268672,0.0002279853,0.00005884405,0.0001496869,0.0007529131,0.00006022973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001821782,"about_ca_system_score_gemma":0.0001751685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001650945,"about_ca_topic_score_gemma":0.0001036811,"domain_scores_codex":[0.9979298,0.0001980203,0.0007075698,0.000521591,0.0001904257,0.0004525837],"domain_scores_gemma":[0.9987044,0.0003899749,0.0002656287,0.0003639104,0.00015569,0.0001204233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001421605,0.0006052072,0.001545877,0.0001178871,0.001352769,0.0001059105,0.002481759,0.0003287511,0.9799273,0.000172297,0.004156068,0.007784547],"study_design_scores_gemma":[0.05089097,0.02576675,0.3482448,0.006737985,0.01545087,0.001470219,0.003268817,0.05446739,0.1767561,0.02048854,0.288519,0.007938589],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877995,0.003639481,0.0002036336,0.005919897,0.0007457744,0.0008285201,0.0004710571,0.0001412507,0.0002508693],"genre_scores_gemma":[0.9956531,0.001090073,0.0004722615,0.001360553,0.0002549073,0.00001065978,0.0007416924,0.0000810285,0.0003357555],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8031712,"threshold_uncertainty_score":0.9403461,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02267160704440953,"score_gpt":0.2510214404074146,"score_spread":0.228349833363005,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}