{"id":"W4390612317","doi":"10.1002/jmv.29346","title":"High‐resolution phylogeographical surveillance of <i>Hantaan orthohantavirus</i> using rapid amplicon‐based Flongle sequencing, Republic of Korea","year":2024,"lang":"en","type":"article","venue":"Journal of Medical Virology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Korea Institute of Marine Science and Technology promotion; Institute for Basic Science; Ministry of Science and ICT, South Korea; Agency for Defense Development; National Research Foundation of Korea; Ministry of Oceans and Fisheries; Korea University; National Research Foundation","keywords":"Outbreak; Virology; Amplicon; Phylogenetic tree; Hantaan virus; Biology; Evolutionary biology; Genome; Zoology; Hantavirus; Genetics; Polymerase chain reaction; Virus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002949501,0.0002872942,0.0002021855,0.0004878371,0.0002195017,0.000339743,0.000243399,0.0001800184,0.0002875257],"category_scores_gemma":[0.0002398297,0.0001749277,0.0003085554,0.000386124,0.0001439134,0.0002709166,0.0002807701,0.0002714886,0.0001453806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002562936,"about_ca_system_score_gemma":0.000283338,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004200961,"about_ca_topic_score_gemma":0.01173157,"domain_scores_codex":[0.9998327,0.00002014154,0.00001606552,0.00006969952,0.00003128544,0.00003006798],"domain_scores_gemma":[0.9997914,0.0000189099,0.00008448387,0.00002013168,0.00005452967,0.00003039117],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002349505,0.00008165792,0.2430276,0.0002702418,0.0001342787,0.0003414769,0.0006868022,0.001036379,0.7229202,0.0001967857,0.0006285869,0.03044107],"study_design_scores_gemma":[0.00002895902,0.0002679095,0.9090059,0.00007599446,0.0002140159,0.0009617743,0.001128436,0.008991981,0.06971866,0.000190666,0.009371334,0.00004433881],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944589,0.00037777,0.00262678,0.0000330366,0.000007418304,0.00004809603,0.001766535,0.0000371797,0.0006441426],"genre_scores_gemma":[0.9836003,0.000319445,0.009569177,0.0001125803,0.000005649436,0.00005865944,0.005751488,0.00002294864,0.0005597688],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004200961,"threshold_uncertainty_score":0.008353055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03484920780476159,"score_gpt":0.3175732091117348,"score_spread":0.2827240013069732,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}