{"id":"W4390705489","doi":"10.1016/j.anaerobe.2024.102819","title":"Bacteroides and related species: The keystone taxa of the human gut microbiota","year":2024,"lang":"en","type":"article","venue":"Anaerobe","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":207,"is_retracted":false,"has_abstract":true,"ca_institutions":"Microsemi (Canada)","funders":"Ferring Pharmaceuticals","keywords":"Biology; Bacteroides fragilis; Bacteroides thetaiotaomicron; Gut flora; Bacteroides; Microbiology; Colonisation resistance; Human gastrointestinal tract; Microbiome; Human microbiome; Gastrointestinal tract; Colonization; Bacteria; Immunology; Antibiotics; Bioinformatics; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001356345,0.00009855538,0.00009404181,0.00001855603,0.0001417229,0.00003036299,0.0001865612,0.00009964531,0.00006214475],"category_scores_gemma":[0.00001374316,0.00005602169,0.0000772184,0.0001021308,0.0002158853,0.000002260148,0.0001352545,0.0001238609,0.000009544525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008414935,"about_ca_system_score_gemma":0.00004488938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001053881,"about_ca_topic_score_gemma":0.0001749201,"domain_scores_codex":[0.9993782,0.00005008344,0.0001724954,0.0002044216,0.00004283362,0.0001519598],"domain_scores_gemma":[0.9995534,0.00001057051,0.00004902002,0.0003347062,0.00002527919,0.00002705215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002738037,0.000010917,0.0006780763,0.00003966038,0.00004243918,0.000001116183,0.0001733007,5.68944e-7,0.9855073,0.00114875,0.01218465,0.0002104937],"study_design_scores_gemma":[0.0003798813,0.0002067831,0.2310289,0.0001729256,0.00007447538,0.0001037366,0.0003016997,0.000007038719,0.358537,0.0003273262,0.408616,0.0002442272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926226,0.003688053,0.000004269099,0.001488666,0.0002116726,0.0001388577,0.00002509094,0.000008858417,0.00181198],"genre_scores_gemma":[0.989926,0.0005069133,0.00003737918,0.0002984164,0.00008087968,0.000002333602,0.00002931,0.00001428453,0.009104484],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6269703,"threshold_uncertainty_score":0.2284498,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00722365893518545,"score_gpt":0.2396097863648756,"score_spread":0.2323861274296901,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}