{"id":"W4390729428","doi":"10.1101/2024.01.05.573998","title":"Pathogen and host adapt pH responses during enteric infection","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Pathogen; Microbiology; Biology; Host (biology); Virulence; Salmonella; Adaptation (eye); Secretion; Colonization; Small intestine; Bacteria; Gene; Ecology; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002192661,0.0002206495,0.0002843984,0.0001409902,0.0001093941,0.0003432432,0.0001158452,0.0003237916,0.0009431334],"category_scores_gemma":[0.0001753333,0.0001117951,0.0001214095,0.00009088365,0.0002276273,0.0002036777,0.0003477875,0.0003761293,0.0002555463],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002019547,"about_ca_system_score_gemma":0.0001030015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002175652,"about_ca_topic_score_gemma":0.0001846056,"domain_scores_codex":[0.9998423,0.00003128198,0.000006012735,0.00003289488,0.00003867357,0.00004897412],"domain_scores_gemma":[0.9999055,0.00001253255,0.00002859558,0.00001190678,0.00001472949,0.00002668239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001500791,0.00001528308,0.001109134,0.000019537,0.000002901817,0.00006167946,0.00001967399,0.00007837354,0.9974058,0.00005397508,0.00003851323,0.001045039],"study_design_scores_gemma":[0.00003115209,0.001115372,0.1902956,0.00001435052,0.00002246981,0.0007590764,0.0003078389,0.00440234,0.7996786,0.0005394662,0.002810264,0.00002339552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960577,0.0007427602,0.001676686,0.0001118189,0.00002007965,0.00001673691,0.0002003376,0.00005104178,0.001122807],"genre_scores_gemma":[0.9981447,0.0001694915,0.0007837542,0.00004411067,0.000007116603,0.00001013177,0.0001363834,0.000008980174,0.0006952838],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009431334,"threshold_uncertainty_score":0.003155053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01206626910521441,"score_gpt":0.2440902568995837,"score_spread":0.2320239877943693,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}