{"id":"W4390794905","doi":"10.1099/mgen.0.001174","title":"Genomic and clinical characteristics of campylobacteriosis in Australia","year":2024,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Health and Medical Research Council; Agrifutures Australia; Department of Health, State Government of Victoria; University of Melbourne; Meat and Livestock Australia; Queensland Health; ACT Health; Australian Government; Medical Research Council; NSW Ministry of Health; Department of Health and Aged Care, Australian Government; Massey University; Hunter New England Local Health District; U.S. Department of Health and Human Services","keywords":"Campylobacteriosis; Virulence; Odds ratio; Campylobacter jejuni; Disease; Campylobacter; Multilocus sequence typing; Medicine; Odds; Internal medicine; Biology; Genotype; Gene; Genetics; Logistic regression; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000332041,0.0001961675,0.0002442235,0.001054916,0.0005396656,0.0004369823,0.0002273046,0.0003285777,0.0009707956],"category_scores_gemma":[0.001692796,0.0002826408,0.0001707236,0.0009175797,0.0005188499,0.0003142096,0.0006563172,0.0002607885,0.0001362021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005801166,"about_ca_system_score_gemma":0.000380706,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02941277,"about_ca_topic_score_gemma":0.02890983,"domain_scores_codex":[0.9996007,0.00006641752,0.00005710607,0.0001029607,0.0001047051,0.00006816632],"domain_scores_gemma":[0.9989743,0.00008667591,0.0004109519,0.00004496541,0.0002596282,0.0002234959],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005035252,0.00003409138,0.9932998,0.00002821895,0.00001525766,0.0002937909,0.000894225,0.00004329162,0.002796065,0.00001632655,0.00009876293,0.002429766],"study_design_scores_gemma":[9.969227e-7,0.0000368266,0.9992988,0.00000415962,0.000002671475,0.0002542973,0.0002180881,0.0000485852,0.00003608656,0.000009105413,0.00008875004,0.000001554399],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994251,0.00006983547,0.00003613861,0.00002148526,9.927969e-7,0.00001321095,0.0001358201,0.000001211162,0.0002962715],"genre_scores_gemma":[0.999401,0.00007038821,0.0001193798,0.00002292855,0.000002175228,0.00001086933,0.0001999119,9.29128e-7,0.0001725196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02941277,"threshold_uncertainty_score":0.05848312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04301582828024558,"score_gpt":0.2876558015890778,"score_spread":0.2446399733088322,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}