{"id":"W4390794905","doi":"10.1099/mgen.0.001174","title":"Genomic and clinical characteristics of campylobacteriosis in Australia","year":2024,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Health and Medical Research Council; Agrifutures Australia; Department of Health, State Government of Victoria; University of Melbourne; Meat and Livestock Australia; Queensland Health; ACT Health; Australian Government; Medical Research Council; NSW Ministry of Health; Department of Health and Aged Care, Australian Government; Massey University; Hunter New England Local Health District; U.S. Department of Health and Human Services","keywords":"Campylobacteriosis; Virulence; Odds ratio; Campylobacter jejuni; Disease; Campylobacter; Multilocus sequence typing; Medicine; Odds; Internal medicine; Biology; Genotype; Gene; Genetics; Logistic regression; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004559124,0.0001348294,0.0003550989,0.0000212815,0.00002526075,0.00003983439,0.0001577586,0.0001858495,0.000159759],"category_scores_gemma":[0.0000334964,0.00006415657,0.0001116304,0.0001373882,0.0001244185,0.00003945361,0.0001011927,0.0001770013,0.00005071414],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000428806,"about_ca_system_score_gemma":0.00001457056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004151308,"about_ca_topic_score_gemma":0.0005324055,"domain_scores_codex":[0.998695,0.0001085312,0.0005866892,0.0003304894,0.00003230224,0.0002469593],"domain_scores_gemma":[0.9995242,0.0002515269,0.00007919449,0.00005509912,0.0000173459,0.00007264972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003051283,0.00003168586,0.258205,0.00001696842,0.00001812589,0.00001027515,0.00006522956,2.214588e-7,0.7033199,0.00007223469,0.0002496299,0.03798015],"study_design_scores_gemma":[0.00008361565,0.0001068741,0.967836,0.00002890482,0.00001993191,0.00002409515,0.00002769212,0.00003110291,0.000812398,0.0001337356,0.03075586,0.0001397595],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985569,0.0002634943,0.000002002462,0.0003086644,0.0005131341,0.000122849,0.0001661279,0.00002400204,0.00004290117],"genre_scores_gemma":[0.9984839,0.0006570441,0.0001281,0.0001423564,0.0003484095,0.000002055124,0.00006341605,0.000001781039,0.0001729548],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.709631,"threshold_uncertainty_score":0.2616229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04301582828024558,"score_gpt":0.2876558015890778,"score_spread":0.2446399733088322,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}