{"id":"W4390875074","doi":"10.1038/s42003-024-05764-y","title":"Novel lncRNA regulatory elements in milk somatic cells of Holstein dairy cows associated with mastitis","year":2024,"lang":"en","type":"article","venue":"Communications Biology","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canada First Research Excellence Fund; Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Biology; Transcriptome; Gene; Genetics; Mastitis; Genome; Somatic cell; Bovine genome; Quantitative trait locus; RNA; Long non-coding RNA; Computational biology; Gene expression; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003837313,0.0001371394,0.0001921403,0.0001783524,0.00005859343,0.00001417118,0.0006984751,0.000237855,0.00003244645],"category_scores_gemma":[0.0001118742,0.0001321794,0.0000623224,0.0003553742,0.0003017813,0.000004523911,0.0004523734,0.0002498131,0.00001121538],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007737328,"about_ca_system_score_gemma":0.0002504247,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006907725,"about_ca_topic_score_gemma":0.0007417903,"domain_scores_codex":[0.9987684,0.00022893,0.0003525648,0.0002912224,0.0001015515,0.0002573506],"domain_scores_gemma":[0.9983965,0.00007510385,0.00009535141,0.001275686,0.0001076621,0.0000496807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002173048,0.0001350571,0.0002617756,0.00003059128,0.0001452001,0.000002020683,0.00005587572,0.00005358823,0.995867,0.001448589,0.0002614002,0.001717152],"study_design_scores_gemma":[0.002194935,0.0009684696,0.002892802,0.0006006908,0.00008273363,0.00003144662,0.0002101228,0.007485785,0.9564955,0.0007247734,0.02781122,0.0005015645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9313279,0.01967695,0.04056337,0.00114653,0.0003538009,0.001406387,0.0005528982,0.00008894935,0.004883251],"genre_scores_gemma":[0.9937119,0.0008353486,0.00411765,0.00006426072,0.00001766814,0.0001052926,0.0007304678,0.00003138901,0.0003860368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06238403,"threshold_uncertainty_score":0.539012,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02389053788300043,"score_gpt":0.3012572711803422,"score_spread":0.2773667332973417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}