{"id":"W4390910070","doi":"10.1128/spectrum.02692-23","title":"Molecular detection and characterization of the <i>Mycobacterium tuberculosis</i> complex subspecies responsible for bovine tuberculosis in Punjab, Pakistan","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canada Research Chairs; Higher Education Commission, Pakistan; Pennsylvania State University; University of Pennsylvania; Bill and Melinda Gates Foundation","keywords":"Tuberculosis; Subspecies; Mycobacterium tuberculosis; Biology; Mycobacterium tuberculosis complex; Microbiology; Virology; Zoology; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003459979,0.0003203981,0.0002252215,0.0007678508,0.0005111083,0.000873388,0.0002903302,0.0004658266,0.0006824062],"category_scores_gemma":[0.0005719627,0.00019467,0.0002062102,0.0006540826,0.0003700635,0.0002614893,0.0003350315,0.0003548432,0.0002924343],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004195581,"about_ca_system_score_gemma":0.0004064613,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01179248,"about_ca_topic_score_gemma":0.009002024,"domain_scores_codex":[0.9996207,0.00004842495,0.00003530804,0.0001110168,0.0001125049,0.00007210757],"domain_scores_gemma":[0.9995418,0.00009330347,0.0001881174,0.00002113778,0.00009743529,0.00005816945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002794618,0.0002383964,0.5478716,0.0002632367,0.00005419009,0.001022231,0.0009680685,0.0004133024,0.4295078,0.0001243579,0.0006011631,0.01865618],"study_design_scores_gemma":[0.00002565711,0.0003860394,0.9726543,0.00006530016,0.00004720308,0.002104112,0.001443598,0.0007605836,0.01835391,0.00004958686,0.004096085,0.0000137701],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969004,0.0004295897,0.0005393176,0.00009697793,0.00001502643,0.00003595291,0.0009109782,0.000007861406,0.001063827],"genre_scores_gemma":[0.996695,0.0002876391,0.00123102,0.0001136131,0.00001184708,0.00001437026,0.001340571,0.000003934384,0.00030194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01179248,"threshold_uncertainty_score":0.02344769,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01483602852198693,"score_gpt":0.2872515124547971,"score_spread":0.2724154839328101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}