{"id":"W4390910070","doi":"10.1128/spectrum.02692-23","title":"Molecular detection and characterization of the <i>Mycobacterium tuberculosis</i> complex subspecies responsible for bovine tuberculosis in Punjab, Pakistan","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canada Research Chairs; Higher Education Commission, Pakistan; Pennsylvania State University; University of Pennsylvania; Bill and Melinda Gates Foundation","keywords":"Tuberculosis; Subspecies; Mycobacterium tuberculosis; Biology; Mycobacterium tuberculosis complex; Microbiology; Virology; Zoology; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006358127,0.0002213037,0.0005168128,0.0003318198,0.00008494726,0.0000257861,0.0001195758,0.0002456119,0.00007684917],"category_scores_gemma":[0.0001723707,0.0001594239,0.0001877305,0.0005107324,0.0003458253,0.00007621366,0.0001116687,0.0003238144,0.000008851802],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001616956,"about_ca_system_score_gemma":0.0001052138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001388563,"about_ca_topic_score_gemma":0.0005871152,"domain_scores_codex":[0.9980981,0.0003090527,0.0005358002,0.0004872096,0.00006685183,0.0005030337],"domain_scores_gemma":[0.9991801,0.0002587654,0.00007409722,0.0003435125,0.00006325254,0.00008027173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006792284,0.00006204637,0.01167949,0.0003094513,0.0001304747,0.0000131826,0.00009613687,0.000001261373,0.9849509,0.001049759,0.0002576504,0.000770397],"study_design_scores_gemma":[0.0008574264,0.0006701456,0.2877868,0.0001553632,0.0001083814,0.0004708424,0.00004495402,0.0006559179,0.6796078,0.0004591953,0.02900159,0.000181617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9723652,0.000893624,0.0003377068,0.02475823,0.0002950897,0.0008818273,0.0002504917,0.0000570146,0.000160815],"genre_scores_gemma":[0.9977723,0.0004961944,0.0001319638,0.0009545807,0.0001096308,0.00007680614,0.0002577025,0.00003448845,0.0001663385],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3053431,"threshold_uncertainty_score":0.6501119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01483602852198693,"score_gpt":0.2872515124547971,"score_spread":0.2724154839328101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}