{"id":"W4390954806","doi":"10.1128/spectrum.03694-23","title":"Unraveling the transcriptional features and gene expression networks of pathogenic and saprotrophic <i>Ophiostoma</i> species during the infection of <i>Ulmus americana</i>","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Forest Service; McGill University; Université Laval; Natural Resources Canada; Centre de Géomatique du Québec","funders":"Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Génome Québec; Genome Canada","keywords":"Ophiostoma; Biology; Gene; Dutch elm disease; Genetics; Virulence; Phenotype; Transcriptome; Gene expression; Fungus; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005852844,0.0001334845,0.0001626404,0.0002653641,0.0001740654,0.000210502,0.00009984049,0.0001473511,0.0004652541],"category_scores_gemma":[0.0000744667,0.00008840934,0.000161418,0.0003199226,0.000149719,0.0001974567,0.0001471941,0.0002129722,0.00009529262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001570701,"about_ca_system_score_gemma":0.0001500655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001146999,"about_ca_topic_score_gemma":0.001414762,"domain_scores_codex":[0.9999405,0.000005135491,0.000002785883,0.00002607451,0.000009673345,0.00001589014],"domain_scores_gemma":[0.9999243,0.00001227422,0.00002578277,0.000004525935,0.00001463676,0.00001843538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009985376,0.00002307673,0.00919369,0.00002985673,0.000009053998,0.00004204139,0.00005948609,0.0001461555,0.9884729,0.00005937273,0.00004024546,0.001824323],"study_design_scores_gemma":[0.00001267267,0.0002664829,0.8473637,0.00001535578,0.00005985132,0.0003165758,0.0006057255,0.009684959,0.1389769,0.0003293958,0.002351683,0.00001676958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986151,0.0001360979,0.0006126316,0.00002301544,0.000001595765,0.000004958524,0.0003476038,0.00001905725,0.000240035],"genre_scores_gemma":[0.9971615,0.0001274424,0.001061179,0.00002796065,0.000004383729,0.00002080463,0.0009588637,0.000006202871,0.0006316074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001146999,"threshold_uncertainty_score":0.002280593,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003278856641248362,"score_gpt":0.17206774571142,"score_spread":0.1687888890701716,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}