{"id":"W4390974923","doi":"10.3390/pathogens13010084","title":"Markers of Inflammation, Tissue Damage, and Fibrosis in Individuals Diagnosed with Human Immunodeficiency Virus and Pneumonia: A Cohort Study","year":2024,"lang":"en","type":"article","venue":"Pathogens","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Universidad Pontificia Bolivariana; Hospital Universitario de San Vicente Fundación; Canada Research Chairs; University of Manitoba; Universidad de Antioquia; Ministerio de Ciencia, Tecnología e Innovación","keywords":"Inflammation; Pneumonia; Fibrosis; Human immunodeficiency virus (HIV); Medicine; Cohort; Immunology; Pathology; Virology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003191274,0.0001887248,0.0003655046,0.0003148759,0.00008021777,0.00004780783,0.00003916845,0.00005888797,0.00002828689],"category_scores_gemma":[0.0000405583,0.0001486834,0.00002620515,0.0003864768,0.00009491096,0.00008771468,0.00005054723,0.0001377633,0.000004797796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006044419,"about_ca_system_score_gemma":0.0000424901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000303461,"about_ca_topic_score_gemma":0.0003747974,"domain_scores_codex":[0.9987518,0.00007767854,0.0003408556,0.0003793749,0.000270047,0.0001802705],"domain_scores_gemma":[0.9994656,0.0001061666,0.00006556207,0.0002355449,0.00004199818,0.00008509359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003813479,0.0002341178,0.7375166,0.0001186606,0.0001371952,0.0003683923,0.001602743,0.000003859255,0.2567329,0.00002901008,0.000003542179,0.00321483],"study_design_scores_gemma":[0.001398909,0.001670472,0.9902342,0.0002173661,0.0003033843,0.0001286421,0.0005956915,0.00008813244,0.005054271,0.00002349505,0.0001515975,0.000133817],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973891,0.0007068823,0.000009894909,0.0001354895,0.00003475394,0.00120559,0.00005658053,0.0000619256,0.0003997686],"genre_scores_gemma":[0.9993793,0.0001756525,0.00008819135,0.00001458923,0.00001405847,0.0001667604,0.00001796515,0.00002565976,0.0001178513],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2527176,"threshold_uncertainty_score":0.6063134,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008002159243272565,"score_gpt":0.2656120897451806,"score_spread":0.257609930501908,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}