{"id":"W4390988349","doi":"10.1002/jmv.29397","title":"Circulation, viral diversity and genomic rearrangement in mpox virus in the Netherlands during the 2022 outbreak and beyond","year":2024,"lang":"en","type":"article","venue":"Journal of Medical Virology","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Erasmus Medisch Centrum; Rijksinstituut voor Volksgezondheid en Milieu; Amsterdam University Medical Centers","keywords":"Outbreak; Transmission (telecommunications); Virology; Biology; Phylogenetics; Genome; Virus; Evolutionary biology; Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003849301,0.0001613903,0.0001757754,0.0004335668,0.0002550035,0.00072184,0.00015945,0.0003457425,0.0003137782],"category_scores_gemma":[0.0006674296,0.0001641441,0.0002144209,0.0003612384,0.0002066397,0.000357736,0.000311206,0.0002423946,0.00008061986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000536829,"about_ca_system_score_gemma":0.0002970505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01513101,"about_ca_topic_score_gemma":0.01682589,"domain_scores_codex":[0.9997846,0.00004410135,0.00001182628,0.00006159717,0.0000384124,0.00005949774],"domain_scores_gemma":[0.9998349,0.00003160795,0.00006255457,0.00001070467,0.00003368277,0.00002645506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00042739,0.0001050812,0.9247862,0.0000451787,0.00007595382,0.0009237702,0.002010153,0.001621954,0.06117815,0.000127959,0.000238163,0.008460129],"study_design_scores_gemma":[0.000005263137,0.00009601178,0.9944365,0.00001583902,0.00001867427,0.0004772716,0.001037713,0.0009336427,0.001891064,0.00005982608,0.001020287,0.000007826212],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993725,0.00008610603,0.0001043007,0.000008262326,0.000001324665,0.000008362639,0.0002044249,0.000001164226,0.0002136643],"genre_scores_gemma":[0.9984744,0.0001156705,0.0002895216,0.00001368145,0.000002246113,0.00001456145,0.0008793753,0.000002809286,0.0002077168],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01513101,"threshold_uncertainty_score":0.03008592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01215905650033745,"score_gpt":0.2610692637952662,"score_spread":0.2489102072949288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}