{"id":"W4391097775","doi":"10.3390/jof10010086","title":"Associations between Genomic Variants and Antifungal Susceptibilities in the Archived Global Candida auris Population","year":2024,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University","keywords":"Candida auris; Biology; Clade; Anidulafungin; Genetics; Antifungal drug; Caspofungin; Voriconazole; Single-nucleotide polymorphism; Micafungin; Flucytosine; Posaconazole; Fluconazole; Population; Phylogenetic tree; Gene; Microbiology; Genotype; Medicine; Candida albicans; Antifungal","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001066434,0.00009785088,0.0003106546,0.0001016259,0.00006994451,0.00007672304,0.00008270234,0.00006672618,0.00004662305],"category_scores_gemma":[0.0002162216,0.00006382748,0.0001245282,0.0001698278,0.00004706881,0.0001582751,0.00001724349,0.0003211918,0.000005997998],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002451063,"about_ca_system_score_gemma":0.0001968224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003287419,"about_ca_topic_score_gemma":0.0005237958,"domain_scores_codex":[0.9987433,0.000138039,0.0004916553,0.0001354175,0.0003167179,0.0001748579],"domain_scores_gemma":[0.9992756,0.000339713,0.0001219518,0.0001254646,0.00006471277,0.00007259558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000625151,0.00003734194,0.9908746,0.00005482793,0.00008204011,0.00007186602,0.001008585,0.000001715223,0.001000829,0.0004215188,0.001008809,0.005375374],"study_design_scores_gemma":[0.0003634671,0.0001808852,0.9961038,0.000160286,0.000150974,0.00006560201,0.0003763667,0.00007516693,0.00001296106,0.002223774,0.0002282022,0.00005848653],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994193,0.003161347,0.0001340566,0.001015539,0.0001792289,0.0001489716,0.000129021,0.000009617674,0.001029253],"genre_scores_gemma":[0.9987741,0.0002487464,0.0002616509,0.00008507121,0.0004194858,6.195501e-7,0.00002306488,0.000006847137,0.0001804366],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005316887,"threshold_uncertainty_score":0.2602809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02201465215526602,"score_gpt":0.3098804348054576,"score_spread":0.2878657826501915,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}