{"id":"W4391097775","doi":"10.3390/jof10010086","title":"Associations between Genomic Variants and Antifungal Susceptibilities in the Archived Global Candida auris Population","year":2024,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University","keywords":"Candida auris; Biology; Clade; Anidulafungin; Genetics; Antifungal drug; Caspofungin; Voriconazole; Single-nucleotide polymorphism; Micafungin; Flucytosine; Posaconazole; Fluconazole; Population; Phylogenetic tree; Gene; Microbiology; Genotype; Medicine; Candida albicans; Antifungal","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005183097,0.000279952,0.0003745726,0.0009733786,0.0003515555,0.0006847858,0.0003379819,0.0003638415,0.001311641],"category_scores_gemma":[0.001490007,0.0001846595,0.0004280079,0.001540596,0.0004685527,0.0002692816,0.0006761924,0.0004531157,0.0001654884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001411182,"about_ca_system_score_gemma":0.0001295101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003510129,"about_ca_topic_score_gemma":0.003787582,"domain_scores_codex":[0.9995049,0.0001014132,0.00003946268,0.0002487111,0.00005817818,0.00004739597],"domain_scores_gemma":[0.9991365,0.0001698979,0.0002788655,0.0001984938,0.0001042404,0.0001120589],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001697534,0.00001670105,0.9919714,0.00002491491,0.0002769266,0.0002016655,0.0003231194,0.0001307021,0.002786827,0.00006474133,0.0001995956,0.003833678],"study_design_scores_gemma":[0.00000599947,0.00004336752,0.9983883,0.000009103079,0.0000984402,0.0004749288,0.0002286833,0.0001542307,0.0001179734,0.00004680337,0.0004271428,0.000005054624],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983715,0.0004388586,0.00017929,0.00002916275,0.000004305503,0.000004143848,0.0007520652,0.000004849753,0.0002157885],"genre_scores_gemma":[0.9984849,0.0002216993,0.0001579896,0.00003057096,0.00001223401,0.000006222629,0.001009764,0.000006365937,0.00007016861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003510129,"threshold_uncertainty_score":0.006979346,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02201465215526602,"score_gpt":0.3098804348054576,"score_spread":0.2878657826501915,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}