{"id":"W4391100290","doi":"10.1261/rna.079779.123","title":"Direct and indirect control of Rho-dependent transcription termination by the<i>Escherichia coli lysC</i>riboswitch","year":2024,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Fonds de recherche du Québec; Natural Sciences and Engineering Research Council of Canada; National Institute of General Medical Sciences; Centre National de la Recherche Scientifique; National Institutes of Health; Agence Nationale de la Recherche","keywords":"Riboswitch; Biology; Transcription (linguistics); RNase P; Gene expression; RNA; Cell biology; Gene; Messenger RNA; Regulation of gene expression; Genetics; Molecular biology; Non-coding RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003022499,0.00009838279,0.0001144059,0.00002196018,0.00004691999,0.00003368146,0.00008423646,0.00009655269,0.00002364136],"category_scores_gemma":[0.00002448343,0.00007279574,0.00005653709,0.00005307464,0.00003516882,0.000004963085,0.00001242598,0.00004678542,0.000004000754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007090536,"about_ca_system_score_gemma":0.00002421814,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000223459,"about_ca_topic_score_gemma":0.000008315568,"domain_scores_codex":[0.9993516,0.00008938566,0.0001388555,0.0001999664,0.0001114957,0.0001087336],"domain_scores_gemma":[0.99975,0.00002019733,0.00004073027,0.0001344777,0.00002435629,0.00003024388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004242313,0.00001674347,0.00002427634,0.00003713815,0.00005246803,0.000001188906,0.00007777176,0.000001455527,0.9715573,0.00005345074,0.0005660531,0.02756972],"study_design_scores_gemma":[0.00018464,0.0001294245,0.0001989145,0.00002891742,0.00004744073,0.000005250158,0.00002777437,0.00009841651,0.9805815,0.000097075,0.01851263,0.00008805964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9817799,0.01001221,0.005297895,0.0003312593,0.0002044888,0.0003012031,0.00006549097,0.00002001206,0.001987526],"genre_scores_gemma":[0.9980066,0.0004723793,0.00006711491,0.0001103359,0.00007840244,0.00004319913,0.00002174546,0.00001504712,0.001185179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02748166,"threshold_uncertainty_score":0.2968524,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006619188300636516,"score_gpt":0.2200069095257192,"score_spread":0.2133877212250827,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}