{"id":"W4391103603","doi":"10.1111/tpj.16625","title":"A genome assembly of ginger (<i>Zingiber officinale</i> Roscoe) provides insights into genome evolution and 6‐gingerol biosynthesis","year":2024,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Ginger and Zingiberaceae research","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Natural Science Foundation of Shandong Province; National Natural Science Foundation of China","keywords":"Genome; Biology; De novo transcriptome assembly; Transcriptome; Retrotransposon; Gene; Genetics; Gingerol; Sequence assembly; Botany; Gene expression; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001988651,0.000240026,0.0003155901,0.0003984972,0.0006126732,0.0001579962,0.0003580541,0.0001868662,0.0002404116],"category_scores_gemma":[0.00008976353,0.0001566749,0.0001317827,0.0003313558,0.0002606973,0.0002389115,0.0001384459,0.001412794,0.00007207783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001501661,"about_ca_system_score_gemma":0.0002368733,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003398217,"about_ca_topic_score_gemma":0.00001973902,"domain_scores_codex":[0.9978269,0.0005846205,0.0004511279,0.0002750118,0.0003447912,0.0005175335],"domain_scores_gemma":[0.9984021,0.0009348033,0.0001413233,0.0001678938,0.0001118852,0.0002419645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003440567,0.0001282118,0.000925615,0.0003291612,0.000537601,0.00020985,0.007212093,0.0003954901,0.9842067,0.0008409165,0.0004748247,0.004395449],"study_design_scores_gemma":[0.003840443,0.001656549,0.05962456,0.00147662,0.002957437,0.01170876,0.003428203,0.06934395,0.217707,0.01352101,0.6125261,0.002209425],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9557266,0.0397458,0.0007457361,0.001946272,0.0005858638,0.0002931268,0.00003752844,0.0000654226,0.0008536837],"genre_scores_gemma":[0.9956478,0.002955631,0.0001444413,0.0001781011,0.000552155,0.00001233072,0.000007067028,0.00003304563,0.0004693852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7664998,"threshold_uncertainty_score":0.6389015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08021426247171771,"score_gpt":0.3802877036240465,"score_spread":0.3000734411523288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}