{"id":"W4391103603","doi":"10.1111/tpj.16625","title":"A genome assembly of ginger (<i>Zingiber officinale</i> Roscoe) provides insights into genome evolution and 6‐gingerol biosynthesis","year":2024,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Ginger and Zingiberaceae research","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Natural Science Foundation of Shandong Province; National Natural Science Foundation of China","keywords":"Genome; Biology; De novo transcriptome assembly; Transcriptome; Retrotransposon; Gene; Genetics; Gingerol; Sequence assembly; Botany; Gene expression; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001928136,0.00110761,0.0005965598,0.001023703,0.0006207805,0.0005163941,0.0003152529,0.0005222044,0.00249244],"category_scores_gemma":[0.0003959158,0.0003837825,0.001120504,0.001068988,0.0001506496,0.0004923574,0.0003819895,0.0008511361,0.001486969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004138957,"about_ca_system_score_gemma":0.0006560948,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005732149,"about_ca_topic_score_gemma":0.008512659,"domain_scores_codex":[0.9998902,0.000009005775,0.000007351197,0.00005431841,0.00002309939,0.00001589184],"domain_scores_gemma":[0.9998229,0.00002217625,0.00004161205,0.00002767504,0.00004795418,0.00003775302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003664684,0.00003776891,0.00353304,0.0004235556,0.00007554534,0.0001989637,0.0001481411,0.0008263598,0.9792691,0.0002377211,0.001138485,0.01374491],"study_design_scores_gemma":[0.000223539,0.000561715,0.318191,0.0002860629,0.001123729,0.001836827,0.0005978735,0.02810965,0.4815413,0.001482419,0.1658037,0.0002422433],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8074293,0.007030805,0.06722607,0.0005923381,0.0002746665,0.0003018419,0.1052104,0.005977943,0.005956597],"genre_scores_gemma":[0.5098899,0.005242569,0.1583269,0.0001785118,0.00007007743,0.0002749295,0.3164969,0.001673414,0.007846852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005732149,"threshold_uncertainty_score":0.01139754,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08021426247171771,"score_gpt":0.3802877036240465,"score_spread":0.3000734411523288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}