{"id":"W4391135876","doi":"10.1128/msystems.01182-23","title":"Metagenomic analysis of the honey bee queen microbiome reveals low bacterial diversity and Caudoviricetes phages","year":2024,"lang":"en","type":"article","venue":"mSystems","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Project Apis m.; L'Oreal USA; U.S. Department of Agriculture; National Institute of Food and Agriculture; National Science Foundation","keywords":"Microbiome; Metagenomics; Biology; Diversity (politics); Honey bee; Ecology; Zoology; Bioinformatics; Genetics; Sociology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002276738,0.0003702909,0.0004438182,0.0007326803,0.000641509,0.0009874598,0.0001390224,0.000459196,0.001209576],"category_scores_gemma":[0.0003608395,0.000174075,0.0004060037,0.0005405335,0.0002301689,0.0004072684,0.0006948936,0.0004225188,0.0002573662],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001758995,"about_ca_system_score_gemma":0.0002614858,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001992529,"about_ca_topic_score_gemma":0.003506355,"domain_scores_codex":[0.9997215,0.00003325643,0.00001663862,0.000104718,0.00006832503,0.00005553795],"domain_scores_gemma":[0.9998634,0.00002708082,0.00003237946,0.00001242075,0.00003372954,0.00003096693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004948063,0.00009510429,0.1964046,0.0003040852,0.0001722165,0.0003354336,0.0008390016,0.0002823011,0.7800345,0.0002111471,0.0005445082,0.02028222],"study_design_scores_gemma":[0.00001265127,0.0003083558,0.9468216,0.00007488673,0.0001712743,0.0006923913,0.001432952,0.001968535,0.0404247,0.0003188054,0.00773249,0.0000414088],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939834,0.001536113,0.000946682,0.00009028209,0.00002280789,0.0000167653,0.002313302,0.00002874668,0.001061874],"genre_scores_gemma":[0.9939322,0.0004988796,0.001919921,0.0001158068,0.00001256728,0.00001883355,0.002216853,0.00002148725,0.001263447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001992529,"threshold_uncertainty_score":0.0040465,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02119751950930249,"score_gpt":0.2298135153640811,"score_spread":0.2086159958547786,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}