{"id":"W4391360710","doi":"10.1038/s41467-024-45209-y","title":"Longitudinal quantification of Bifidobacterium longum subsp. infantis reveals late colonization in the infant gut independent of maternal milk HMO composition","year":2024,"lang":"en","type":"article","venue":"Nature Communications","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Azrieli Foundation; Israel Science Foundation; Austrian Science Fund; Waterloo Foundation","keywords":"Bifidobacterium longum; Bifidobacterium; Breastfeeding; Biology; Microbiome; Gut flora; Breast milk; Breast feeding; Longitudinal study; Feces; Cohort; Colonization; Immunology; Medicine; Microbiology; Bacteria; Lactobacillus; Internal medicine; Pediatrics; Bioinformatics; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003833513,0.0002944882,0.0002904343,0.0004170627,0.0002849107,0.0003903961,0.0001771355,0.0003143262,0.0006130064],"category_scores_gemma":[0.0004327243,0.0001752299,0.0001982413,0.0003160215,0.0001354355,0.0002024757,0.0003781183,0.000323389,0.0002463573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001749362,"about_ca_system_score_gemma":0.000210014,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002461216,"about_ca_topic_score_gemma":0.004603915,"domain_scores_codex":[0.9997497,0.00004419049,0.00001048796,0.0000897076,0.0000604847,0.00004531305],"domain_scores_gemma":[0.99976,0.00003492482,0.0000792382,0.00002205618,0.00006344178,0.00004035167],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003284891,0.00008115648,0.1943285,0.00008109264,0.00007101231,0.00008124103,0.0003309326,0.0001286929,0.7865942,0.00006092348,0.0002358337,0.01767807],"study_design_scores_gemma":[0.000006272396,0.0008010498,0.8803357,0.00003585694,0.0000965179,0.0003030727,0.0006265327,0.001646506,0.1134764,0.00008409614,0.002572037,0.00001588799],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99297,0.0008915387,0.004400469,0.00005831793,0.00001036611,0.00002223498,0.001074525,0.00004543928,0.0005270219],"genre_scores_gemma":[0.9892856,0.0008030816,0.007216546,0.0001216375,0.00001071633,0.00008133303,0.001478213,0.00002198677,0.0009808269],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002461216,"threshold_uncertainty_score":0.00489372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03145482259568624,"score_gpt":0.34329427189866,"score_spread":0.3118394493029738,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}