{"id":"W4391385268","doi":"10.21203/rs.3.rs-3889020/v1","title":"Mycobacterium tuberculosis resisters despite HIV exhibit activated T cells and macrophages in their pulmonary alveoli","year":2024,"lang":"en","type":"preprint","venue":"Research Square","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Faculty of Medicine and Health, University of Sydney; National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; St. Giles Foundation; Universiteit Stellenbosch; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; CHIST-ERA; Agence Nationale de la Recherche; South African Medical Research Council; Canadian Institutes of Health Research; Alliance de recherche numérique du Canada; McGill University Health Centre; McGill University; Institut des maladies génétiques Imagine","keywords":"Mycobacterium tuberculosis; Human immunodeficiency virus (HIV); Pulmonary tuberculosis; Microbiology; Tuberculosis; Virology; Immunology; Biology; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001249567,0.0001485376,0.0001874841,0.0002558481,0.000197844,0.0002968951,0.00008959156,0.0002396713,0.002012807],"category_scores_gemma":[0.000164494,0.0001559481,0.0001145169,0.0001065728,0.0001755925,0.0001622077,0.0001930913,0.00025732,0.0003792126],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005127999,"about_ca_system_score_gemma":0.00003614376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002534728,"about_ca_topic_score_gemma":0.0002422682,"domain_scores_codex":[0.9999033,0.00001673446,0.000009809219,0.00002862225,0.00001341234,0.00002806295],"domain_scores_gemma":[0.9999055,0.00001646638,0.00002534015,0.00001456516,0.0000166738,0.00002136498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006986948,0.0000828919,0.06918281,0.00006404852,0.00001812755,0.001148771,0.000437811,0.00003167274,0.9241011,0.00006834087,0.00007491773,0.004090865],"study_design_scores_gemma":[0.00007039028,0.00176632,0.8726578,0.00003309576,0.00006281561,0.007315625,0.001528531,0.0004579704,0.1133259,0.000201201,0.002567457,0.00001290484],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999375,0.0002112332,0.0001303884,0.00001179475,0.000001999404,0.000008430838,0.00006388854,0.000004491561,0.0001925893],"genre_scores_gemma":[0.9992177,0.00005947041,0.0001206853,0.00001751381,0.000007290196,0.00001251726,0.00008912815,0.000002461761,0.0004731893],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002012807,"threshold_uncertainty_score":0.006733537,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04760232497571935,"score_gpt":0.3708094721783011,"score_spread":0.3232071472025818,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}