{"id":"W4391386594","doi":"10.1128/mra.01233-23","title":"Complete genome of <i>Escherichia</i> phages Carena and JoYop","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"West African Research Association, Boston University; Canada Research Chairs","keywords":"Escherichia coli; Genome; Biology; Escherichia; Genetics; Identity (music); Gene; Microbiology; Physics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001130273,0.0001466146,0.0001778856,0.00004092251,0.00009681176,0.00003450676,0.0001613882,0.000074076,0.001373825],"category_scores_gemma":[0.000004504747,0.000128383,0.00005620489,0.0001503027,0.0003294804,0.00009877904,0.0002620975,0.0001430033,0.0003548689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005681225,"about_ca_system_score_gemma":0.000006941889,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001633688,"about_ca_topic_score_gemma":0.00003849016,"domain_scores_codex":[0.9990995,0.00005083027,0.0002260067,0.0003363719,0.0000373794,0.0002498992],"domain_scores_gemma":[0.999695,0.00002931841,0.00005351601,0.0001664999,0.000007322143,0.00004834617],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001309737,0.0000318924,0.0008604774,0.00002262772,0.00004883839,0.000008318004,0.0004590254,0.00001076705,0.9921448,0.00000763897,0.005211468,0.001181031],"study_design_scores_gemma":[0.0001524266,0.00009892858,0.002466923,0.00002958871,0.00002721906,0.00007435404,0.0001130692,0.00001743769,0.003214115,0.000009383051,0.9936649,0.0001316678],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888746,0.001444936,0.0001224794,0.0003360094,0.0002122114,0.0001840593,0.001744644,0.00005197129,0.007029131],"genre_scores_gemma":[0.9924167,0.0001379148,0.0005026622,0.0008236609,0.00006129315,0.00001313938,0.0009068091,0.00002495759,0.00511289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9889307,"threshold_uncertainty_score":0.9995391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01035227631712432,"score_gpt":0.2260014046707569,"score_spread":0.2156491283536326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}