{"id":"W4391448406","doi":"10.3389/fpls.2024.1325254","title":"The functional decline of tomato plants infected by Candidatus Liberbacter solanacearum: an RNA-seq transcriptomic analysis","year":2024,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Prince Edward Island; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Biology; Transcriptome; Gene; RNA-Seq; Haplotype; KEGG; Genetics; Host (biology); Botany; Gene expression; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004999742,0.0001189588,0.0001992378,0.00008377338,0.0002478474,0.0001528352,0.0004183854,0.00005814355,0.00005497506],"category_scores_gemma":[0.00001463621,0.00004334575,0.00008450945,0.001417154,0.0002511349,0.0002986749,0.00004351513,0.0001279143,0.000002998589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005225454,"about_ca_system_score_gemma":0.0000560956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002154737,"about_ca_topic_score_gemma":0.002899215,"domain_scores_codex":[0.9986303,0.00004190611,0.0002509729,0.0003587723,0.0003625026,0.0003555121],"domain_scores_gemma":[0.9996402,0.00008385901,0.00004957131,0.00008089321,0.00002852564,0.0001169979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001191748,0.00008752915,0.3930198,0.000008476643,0.0001003774,0.00001822799,0.0002706654,0.0001322365,0.5823178,0.0001103412,0.01391701,0.009898306],"study_design_scores_gemma":[0.0002681683,0.0002295952,0.7688779,0.00006711421,0.0001514678,0.0000408579,0.0005019667,0.1699723,0.03494319,0.0007738661,0.02369304,0.0004805095],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997079,0.0006034442,0.0001651045,0.0001753321,0.0007359007,0.000088535,0.0009682091,0.00003387297,0.0001506479],"genre_scores_gemma":[0.9992464,0.0001596828,0.0001682249,0.00005781902,0.00005493364,0.000005430473,0.0001955533,8.186804e-7,0.0001111575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5473747,"threshold_uncertainty_score":0.1906267,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009104756693068945,"score_gpt":0.2046258343157226,"score_spread":0.1955210776226537,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}