{"id":"W4391504671","doi":"10.1093/ismeco/ycae020","title":"Phylogenetics and environmental distribution of nitric oxide-forming nitrite reductases reveal their distinct functional and ecological roles","year":2024,"lang":"en","type":"article","venue":"ISME Communications","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Energy; University of Calgary","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Sveriges Lantbruksuniversitet; Vetenskapsrådet","keywords":"Biology; Nitrite reductase; Biome; Phylogenetics; Phylogenetic tree; Metagenomics; Clade; Abundance (ecology); Evolutionary biology; Ecology; Niche; Nitrite; Gene; Ecosystem; Genetics; Nitrate","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003965695,0.000291594,0.0003046307,0.0007438348,0.0002287218,0.0003723797,0.0001732563,0.000212059,0.0002981903],"category_scores_gemma":[0.0003983078,0.0001957995,0.0002403895,0.0006070409,0.0002291877,0.0002685819,0.0003989329,0.0002422393,0.0001972585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000174759,"about_ca_system_score_gemma":0.000185688,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001105896,"about_ca_topic_score_gemma":0.001646043,"domain_scores_codex":[0.9997918,0.00003558603,0.00001236658,0.00008691478,0.00003260336,0.00004063246],"domain_scores_gemma":[0.9997519,0.00004883109,0.00008053419,0.00002419293,0.00005778982,0.00003668388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002948405,0.00005117173,0.1815718,0.00007639588,0.00006478695,0.00007763358,0.0004261337,0.001028769,0.8069877,0.0002196697,0.00004873601,0.009152438],"study_design_scores_gemma":[0.000006012902,0.0001401095,0.9805233,0.00001623941,0.00003827777,0.0002064571,0.0005462025,0.00479916,0.01246862,0.0002028628,0.001037128,0.00001563971],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988206,0.0001501476,0.0005570083,0.00001111562,9.240618e-7,0.000002628804,0.0001505396,0.0000096052,0.0002974764],"genre_scores_gemma":[0.9980851,0.0001157883,0.001085273,0.00001254089,0.000001963606,0.000005856065,0.0004988017,0.000008003345,0.0001865792],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001105896,"threshold_uncertainty_score":0.002198935,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02138493496025495,"score_gpt":0.2257208094377277,"score_spread":0.2043358744774728,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}