{"id":"W4391528576","doi":"10.1101/cshperspect.a041465","title":"Petabase-Scale Homology Search for Structure Prediction","year":2024,"lang":"en","type":"article","venue":"Cold Spring Harbor Perspectives in Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; Agence Nationale de la Recherche","keywords":"Library science; Biology; Evolutionary biology; Regional science; Geography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00191495,0.00108674,0.0008901639,0.0008433966,0.0008308751,0.001022205,0.00119614,0.0006171292,0.007255678],"category_scores_gemma":[0.005298632,0.0004558644,0.0006266139,0.001246345,0.0003433624,0.001401221,0.001465571,0.001527113,0.003447318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008032336,"about_ca_system_score_gemma":0.0008999385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001650712,"about_ca_topic_score_gemma":0.004389948,"domain_scores_codex":[0.9990857,0.0002762673,0.0000947439,0.000268908,0.0001832433,0.00009115552],"domain_scores_gemma":[0.9981418,0.0008483111,0.0001143117,0.0004218744,0.0003047693,0.0001690203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.006001526,0.001240827,0.03447425,0.00172195,0.0005854994,0.001310542,0.0007348572,0.06223637,0.5101835,0.02063534,0.06125256,0.2996227],"study_design_scores_gemma":[0.0005333191,0.001479273,0.01134924,0.00009015855,0.0001491109,0.001295736,0.0004156751,0.662681,0.2650201,0.01610814,0.04073603,0.0001421988],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6909276,0.001614494,0.2480726,0.0009615461,0.0003054964,0.0003831356,0.01168531,0.03070911,0.0153408],"genre_scores_gemma":[0.6905667,0.0003142024,0.2828908,0.0003309785,0.00003554257,0.0003175812,0.02079167,0.001434656,0.003317896],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007255678,"threshold_uncertainty_score":0.02427262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01263366839941697,"score_gpt":0.2784567480320702,"score_spread":0.2658230796326532,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}