{"id":"W4391564553","doi":"10.3390/toxins16020086","title":"In Silico Analysis of Shiga Toxin-Producing Escherichia coli O157:H7 Strains from Presumptive Super- and Low-Shedder Cattle","year":2024,"lang":"en","type":"article","venue":"Toxins","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Lethbridge; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council","keywords":"Biology; Virulence; Prophage; Shiga toxin; Phylogenetic tree; Microbiology; Lineage (genetic); Escherichia coli; Feces; Pathogen; Gene; Genetics; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005211706,0.0005162919,0.0005539989,0.0007029829,0.0003682356,0.0007624021,0.0003091917,0.0004964818,0.0009484017],"category_scores_gemma":[0.0008826859,0.0002156025,0.0009126138,0.000542194,0.0001349817,0.0001756913,0.0002810286,0.000318564,0.0004058068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001957036,"about_ca_system_score_gemma":0.0003798257,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001430423,"about_ca_topic_score_gemma":0.001902273,"domain_scores_codex":[0.999676,0.000081254,0.00003119706,0.00009177706,0.00006671462,0.00005301886],"domain_scores_gemma":[0.9995006,0.0002872582,0.00007764751,0.00002291429,0.0000510454,0.00006046837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00234618,0.0009139612,0.3699737,0.000582106,0.0005215465,0.002090161,0.0007349742,0.02834437,0.5811473,0.000281851,0.000512241,0.01255173],"study_design_scores_gemma":[0.0001481222,0.001464653,0.6970065,0.0001245319,0.0009064986,0.002763772,0.00196402,0.1951534,0.09605873,0.0004554468,0.003878724,0.00007570566],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997825,0.00005683884,0.0008778489,0.00002225943,0.000004595004,0.00001413394,0.0009477807,0.00002018873,0.0002312277],"genre_scores_gemma":[0.9878011,0.0001245612,0.004692573,0.00004451883,0.000004826152,0.00003609718,0.006946204,0.0000218552,0.0003282921],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001430423,"threshold_uncertainty_score":0.003172696,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01523701398354775,"score_gpt":0.2938462928709824,"score_spread":0.2786092788874346,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}