{"id":"W4391564553","doi":"10.3390/toxins16020086","title":"In Silico Analysis of Shiga Toxin-Producing Escherichia coli O157:H7 Strains from Presumptive Super- and Low-Shedder Cattle","year":2024,"lang":"en","type":"article","venue":"Toxins","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Lethbridge; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council","keywords":"Biology; Virulence; Prophage; Shiga toxin; Phylogenetic tree; Microbiology; Lineage (genetic); Escherichia coli; Feces; Pathogen; Gene; Genetics; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002523973,0.000189645,0.0003385698,0.0001778102,0.00004909349,0.00004482318,0.0001771233,0.0001274423,0.0001151385],"category_scores_gemma":[0.0002292886,0.0001773038,0.0001209819,0.0006516209,0.0001864161,0.00001327353,0.0002629927,0.0001869981,0.000005464366],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003186848,"about_ca_system_score_gemma":0.0001357886,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009241045,"about_ca_topic_score_gemma":0.003305216,"domain_scores_codex":[0.9985169,0.00009812923,0.0002641682,0.0006116325,0.0001947111,0.0003144927],"domain_scores_gemma":[0.9993418,0.000068687,0.00003622552,0.0003955357,0.00006749158,0.00009019211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004398841,0.0001060257,0.01610436,0.00007917049,0.001270748,0.00001194891,0.001918165,0.0003002876,0.9789568,0.00008416663,0.0007926516,0.0003316797],"study_design_scores_gemma":[0.0007431167,0.0003558478,0.6185884,0.0001173107,0.0005802236,0.000001482127,0.001570903,0.006021766,0.3674202,0.000136506,0.00389243,0.0005717666],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935971,0.004630015,0.0001129954,0.0003184994,0.00008308417,0.0002155026,0.000241862,0.00001672886,0.0007842332],"genre_scores_gemma":[0.9976361,0.0007198573,0.000348171,0.0001261429,0.0001372974,0.00004151084,0.00009186497,0.00002435192,0.0008746379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6115366,"threshold_uncertainty_score":0.7230239,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01523701398354775,"score_gpt":0.2938462928709824,"score_spread":0.2786092788874346,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}