{"id":"W4391602650","doi":"10.1186/s40168-023-01735-3","title":"Divergent maturational patterns of the infant bacterial and fungal gut microbiome in the first year of life are associated with inter-kingdom community dynamics and infant nutrition","year":2024,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Research Manitoba; McMaster University; University of Alberta; University of Manitoba; Children's Hospital Research Institute of Manitoba; University of British Columbia; Public Health Ontario; Hospital for Sick Children; BC Children's Hospital; Université de Sherbrooke; University of Toronto; Alberta Children's Hospital; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Microbiome; Biology; Microbial ecology; Ecology; Medical microbiology; Gut microbiome; Ecological succession; Ecosystem; Microbial population biology; Zoology; Bacteria; Microbiology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002631796,0.0001250481,0.0001675244,0.00006639001,0.0001007567,0.00004069089,0.0001731148,0.0001214957,0.000009244347],"category_scores_gemma":[0.00002152192,0.00007929515,0.00004575237,0.0001340436,0.0001563344,0.000007437062,0.0001966371,0.0001889417,3.954739e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000337748,"about_ca_system_score_gemma":0.00006091763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004756954,"about_ca_topic_score_gemma":0.006714805,"domain_scores_codex":[0.9992573,0.0001465292,0.0002484997,0.0001544286,0.00005345178,0.0001398294],"domain_scores_gemma":[0.9995615,0.00003289082,0.0001246815,0.0002030544,0.00005377728,0.00002408388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001316133,0.0001710928,0.08436545,0.0004230438,0.0000783749,0.000001543409,0.000723172,0.000001045552,0.9132929,0.00004615868,0.0007407095,0.00002492076],"study_design_scores_gemma":[0.001577433,0.0003250132,0.965166,0.0009997253,0.00004977681,0.00006931897,0.000809697,0.00004168782,0.0274238,0.00001318819,0.003314432,0.0002099095],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969246,0.0002943788,0.0000361506,0.0005999602,0.0001268627,0.0002887791,0.001720492,0.000003912981,0.000004848666],"genre_scores_gemma":[0.9990972,0.00009319742,0.00002919064,0.000142091,0.00003585312,0.000007962967,0.0005624333,0.00001139531,0.00002069029],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8858691,"threshold_uncertainty_score":0.3747019,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008860913666568434,"score_gpt":0.2213969747918344,"score_spread":0.212536061125266,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}