{"id":"W4391620656","doi":"10.2139/ssrn.4716762","title":"Persistent Cross-Species Transmission Systems Dominate Shiga Toxin-Producing Escherichia Coli O157:H7 Epidemiology in a High Incidence Region: A Genomic Epidemiology Study","year":2024,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Canadian Food Inspection Agency; University of Calgary; University of Lethbridge","funders":"","keywords":"Epidemiology; Transmission (telecommunications); Escherichia coli; Incidence (geometry); Microbiology; Molecular epidemiology; Biology; Shiga toxin; Virology; Medicine; Genetics; Genotype; Gene; Physics; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005574322,0.0002958076,0.000333132,0.001050843,0.0004437721,0.0009472191,0.0003352264,0.0003897467,0.002335716],"category_scores_gemma":[0.001182122,0.0002602919,0.0002761784,0.001136479,0.0005751759,0.0003959119,0.0006947079,0.0003636584,0.0003360265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002698031,"about_ca_system_score_gemma":0.0004030252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005921776,"about_ca_topic_score_gemma":0.00307627,"domain_scores_codex":[0.999404,0.0001496896,0.00003413224,0.0001740143,0.00006833694,0.000169932],"domain_scores_gemma":[0.9991081,0.0002175155,0.0002619128,0.00007346411,0.0001926759,0.0001463002],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003607941,0.0001590967,0.9710912,0.00002680991,0.00005938051,0.0003406192,0.001428679,0.00006510264,0.02079566,0.0001798622,0.00009639217,0.005396447],"study_design_scores_gemma":[0.000006710245,0.0002407928,0.9964688,0.000006762351,0.00003898954,0.0004749024,0.001675927,0.0001020115,0.0007380738,0.0000629953,0.0001800971,0.000003927636],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993588,0.00007006419,0.0002754202,0.00001111552,0.000001061994,0.000004623328,0.00008011706,0.000003066851,0.0001957013],"genre_scores_gemma":[0.999455,0.00008037465,0.000198133,0.00001598775,0.000003225104,0.000002491875,0.0001091295,0.00000470545,0.0001308819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005921776,"threshold_uncertainty_score":0.0117746,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08736000474633954,"score_gpt":0.3545339672869643,"score_spread":0.2671739625406248,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}