{"id":"W4391649187","doi":"10.1093/lambio/ovae010","title":"Genomic analysis of a cAmpC (CMY-41)-producing <i>Citrobacter freundii</i> ST64 isolated from patient","year":2024,"lang":"en","type":"article","venue":"Letters in Applied Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Citrobacter freundii; Biology; Broth microdilution; Multilocus sequence typing; Microbiology; Colistin; Whole genome sequencing; Genetics; Genome; Klebsiella pneumoniae; Gene; Escherichia coli; Antibiotics; Genotype; Minimum inhibitory concentration","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001361472,0.0002729621,0.000499951,0.0002947283,0.00002945285,0.00002860442,0.0003025066,0.0002904378,0.00009633152],"category_scores_gemma":[0.00001186356,0.0002626037,0.0001880405,0.0004502413,0.0002016138,0.00000304539,0.000186746,0.0002090355,0.00002738241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007138434,"about_ca_system_score_gemma":0.0000422117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00014615,"about_ca_topic_score_gemma":0.000251444,"domain_scores_codex":[0.9980199,0.00008295734,0.0005665862,0.0008838842,0.00004330601,0.0004033631],"domain_scores_gemma":[0.9991266,0.0000445957,0.0001474094,0.0006222572,0.000019658,0.00003953117],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001778469,0.00004043949,0.01125431,0.00002730341,0.001060958,0.00001282444,0.0002871855,0.000324162,0.9843853,0.00003466161,0.001808364,0.0005867152],"study_design_scores_gemma":[0.0007736559,0.0001684918,0.02834847,0.0000871465,0.0007597703,0.00001388626,0.0001359682,0.0001923296,0.9433343,0.00007721176,0.02529241,0.0008163758],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994824,0.0006687866,0.003106418,0.0002392956,0.0003966839,0.0002612646,0.0003136362,0.00002523609,0.0001646828],"genre_scores_gemma":[0.9940428,0.0001047528,0.002443242,0.00161234,0.0001285213,0.00001436514,0.001584586,0.00004028778,0.00002910848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04105095,"threshold_uncertainty_score":0.9999826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003873688147318651,"score_gpt":0.19950508056695,"score_spread":0.1956313924196314,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}