{"id":"W4391649187","doi":"10.1093/lambio/ovae010","title":"Genomic analysis of a cAmpC (CMY-41)-producing <i>Citrobacter freundii</i> ST64 isolated from patient","year":2024,"lang":"en","type":"article","venue":"Letters in Applied Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Citrobacter freundii; Biology; Broth microdilution; Multilocus sequence typing; Microbiology; Colistin; Whole genome sequencing; Genetics; Genome; Klebsiella pneumoniae; Gene; Escherichia coli; Antibiotics; Genotype; Minimum inhibitory concentration","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001602018,0.0004460863,0.0004058435,0.0007448298,0.0004522143,0.0005660469,0.0002568977,0.0006827491,0.0008460641],"category_scores_gemma":[0.0008935605,0.0002183744,0.0006696453,0.0009956331,0.0002909256,0.0002215581,0.0004175902,0.0004903745,0.0003598704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002750756,"about_ca_system_score_gemma":0.0003988979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005042253,"about_ca_topic_score_gemma":0.003834374,"domain_scores_codex":[0.9996483,0.0000277424,0.00003918029,0.0001189201,0.00009677821,0.00006900273],"domain_scores_gemma":[0.9994755,0.0001432861,0.00013627,0.00004130093,0.0001198587,0.00008367702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006720229,0.000218172,0.09040277,0.0004150012,0.00006287399,0.008826732,0.001156043,0.0004412332,0.8849558,0.0001102851,0.0004742428,0.01226491],"study_design_scores_gemma":[0.00006560425,0.002623892,0.691103,0.0002121358,0.0004457128,0.04637786,0.003867004,0.002191271,0.2391215,0.0001982402,0.01368512,0.0001085988],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947171,0.000376392,0.0008890292,0.0001184161,0.00002428646,0.00006209825,0.003300509,0.00002631696,0.0004859808],"genre_scores_gemma":[0.987105,0.0004050377,0.004527496,0.0001461031,0.00002792745,0.00003164146,0.007090856,0.0000289513,0.0006369658],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005042253,"threshold_uncertainty_score":0.0100258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003873688147318651,"score_gpt":0.19950508056695,"score_spread":0.1956313924196314,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}