{"id":"W4391786834","doi":"10.7554/elife.92307.3.sa4","title":"Author Response: Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter","year":2024,"lang":"en","type":"peer-review","venue":"","topic":"Veterinary medicine and infectious diseases","field":"Veterinary","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Lethbridge","funders":"","keywords":"Periplasmic space; Trap (plumbing); Haemophilus influenzae; Transporter; Chemistry; Biophysics; Microbiology; Computational biology; Biology; Physics; Biochemistry; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005195856,0.0008273224,0.002451259,0.001229714,0.00009831102,0.0000634916,0.0003496087,0.0004359547,0.005864276],"category_scores_gemma":[0.00007821743,0.0006332494,0.001409211,0.00143658,0.0003147116,0.0001823336,0.0001538968,0.0007384512,0.0000755811],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001184862,"about_ca_system_score_gemma":0.0002423046,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006074223,"about_ca_topic_score_gemma":0.0001118499,"domain_scores_codex":[0.9958104,0.0002766538,0.001369009,0.00113486,0.0008889945,0.0005200713],"domain_scores_gemma":[0.9979053,0.0002187551,0.0003591716,0.0009259106,0.0002215779,0.0003692971],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01119778,0.0004834401,0.0008754275,0.02621032,0.02024385,0.005290723,0.002376286,0.00002475702,0.007320193,0.0001560963,0.9212511,0.004570064],"study_design_scores_gemma":[0.001299785,0.005790701,0.0547086,0.00443687,0.04027365,0.001116506,0.0001513325,0.001841713,0.00005067969,0.00009638091,0.8888493,0.00138454],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9554742,0.02262153,0.00001612364,0.01437829,0.001616806,0.0009066528,0.003907769,0.0002482504,0.0008303725],"genre_scores_gemma":[0.8954625,0.0007589794,0.00004514443,0.002258333,0.0003979518,0.0001381842,0.001262888,0.000118387,0.09955762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09872725,"threshold_uncertainty_score":0.9996119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06882251239282175,"score_gpt":0.3815928330968177,"score_spread":0.3127703207039959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}