{"id":"W4391807885","doi":"10.1038/s41596-023-00950-4","title":"Web-based multi-omics integration using the Analyst software suite","year":2024,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta; University of British Columbia; McGill University","funders":"Breakthrough T1D Canada; Canadian Institutes of Health Research; Canadian HIV Trials Network, Canadian Institutes of Health Research; Government of Canada; Diabetes Canada; Juvenile Diabetes Research Foundation Canada","keywords":"Workflow; Computer science; Data integration; Omics; Suite; Software; Software suite; Protocol (science); Data mining; Bioinformatics; Database; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003486888,0.002834741,0.002127507,0.004283829,0.001325108,0.003903092,0.002451051,0.0009650416,0.04011718],"category_scores_gemma":[0.004441273,0.001779597,0.00252407,0.002763967,0.0004703417,0.002399778,0.002896824,0.002717223,0.01392264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007899379,"about_ca_system_score_gemma":0.002602923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00408499,"about_ca_topic_score_gemma":0.004575723,"domain_scores_codex":[0.9985837,0.0002050192,0.0002355812,0.0003917876,0.0004465433,0.0001374314],"domain_scores_gemma":[0.9980697,0.0008341637,0.0001807405,0.0003964946,0.0003859325,0.0001330119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003917112,0.0008259703,0.0114118,0.00613416,0.005977612,0.00176768,0.001877926,0.01314081,0.2524213,0.03389991,0.3987154,0.2699103],"study_design_scores_gemma":[0.0009204099,0.0002687911,0.01496381,0.0004907544,0.001176228,0.001531666,0.0004639154,0.2343941,0.2258192,0.06096754,0.4581866,0.0008170547],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.009988628,0.0004837436,0.4847645,0.000437614,0.0002840318,0.0006355976,0.06310089,0.4324924,0.007812533],"genre_scores_gemma":[0.06780951,0.001140952,0.7292006,0.001067405,0.0002005341,0.003361434,0.1258718,0.06046379,0.01088395],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04011718,"threshold_uncertainty_score":0.1342053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01715432393792059,"score_gpt":0.3225595623513768,"score_spread":0.3054052384134562,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}