{"id":"W4391836788","doi":"10.1186/s12863-024-01204-2","title":"Whole genome sequence of Vibrio cholerae NB-183 isolated from freshwater in Ontario, Canada harbors a unique gene repertoire","year":2024,"lang":"en","type":"article","venue":"BMC Genomic Data","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canada First Research Excellence Fund","keywords":"Vibrio cholerae; Genome; Whole genome sequencing; Biology; Cholera; Contig; Gene; Genetics; Genome size; Comparative genomics; Virulence; Strain (injury); Genomics; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001291755,0.0003793958,0.0003529137,0.001092388,0.001687963,0.0005930269,0.0003255957,0.0002948922,0.002541046],"category_scores_gemma":[0.000378981,0.0001775226,0.0004200075,0.004249201,0.0003716364,0.0001398419,0.0003514425,0.0004475942,0.0007525241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005319729,"about_ca_system_score_gemma":0.01370932,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8966277,"about_ca_topic_score_gemma":0.9424282,"domain_scores_codex":[0.9997949,0.000003624795,0.000008548936,0.00005313922,0.00009450964,0.00004525757],"domain_scores_gemma":[0.9996595,0.00002021085,0.00004173965,0.00001572209,0.0002004578,0.00006237342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001341868,0.000171757,0.1057584,0.002533674,0.0001949095,0.001943313,0.003797177,0.00271043,0.7967694,0.0007706599,0.02109946,0.06290888],"study_design_scores_gemma":[0.00005341598,0.0001293552,0.9055846,0.0001641876,0.00014288,0.0004812236,0.002036337,0.001270043,0.01669772,0.0001377195,0.07324377,0.00005865657],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7050183,0.001886361,0.002155983,0.0005319248,0.00005121975,0.0001638772,0.2819961,0.0003835906,0.007812602],"genre_scores_gemma":[0.565324,0.002886278,0.01169354,0.0002911119,0.00001400968,0.0001386193,0.4078995,0.0001677442,0.0115852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1033723,"threshold_uncertainty_score":0.2079622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03715894651380693,"score_gpt":0.2608857222119632,"score_spread":0.2237267756981563,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}