{"id":"W4391873650","doi":"10.1093/jcag/gwad061.015","title":"A15 LEVERAGING CULTURE-DEPENDENT AND -INDEPENDENT METAGENOMICS TO IDENTIFY ENTEROBACTERIACEAE GENES ASSOCIATED WITH ACTIVE ULCERATIVE COLITIS","year":2024,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; McMaster University","funders":"","keywords":"Metagenomics; Ulcerative colitis; Enterobacteriaceae; Microbiology; Gene; Biology; Computational biology; Genetics; Medicine; Escherichia coli; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001283212,0.0007847875,0.0009595905,0.001715042,0.0004720458,0.001284832,0.000540328,0.0006867501,0.001109971],"category_scores_gemma":[0.002036417,0.0003838752,0.00145811,0.001622549,0.000367157,0.0004222574,0.0009673264,0.0008159924,0.0004325387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003352856,"about_ca_system_score_gemma":0.000502325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001421261,"about_ca_topic_score_gemma":0.002957876,"domain_scores_codex":[0.9987634,0.0003097823,0.00009637787,0.0004240045,0.0002866799,0.0001197176],"domain_scores_gemma":[0.9985085,0.000460428,0.0003611832,0.0002121867,0.0003400808,0.0001176485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001032196,0.0003630789,0.1154161,0.0005900629,0.001315817,0.0001259547,0.0002115715,0.001458178,0.8571904,0.0001522393,0.0005600336,0.02158436],"study_design_scores_gemma":[0.0001091485,0.002424605,0.7600191,0.0001728762,0.002527109,0.0008912471,0.0007644011,0.01572221,0.206437,0.0007898791,0.01002592,0.0001164151],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9663693,0.002952087,0.01540682,0.0003215374,0.0001111175,0.000365385,0.01251774,0.0002555092,0.00170045],"genre_scores_gemma":[0.947253,0.001119681,0.03327537,0.0005488051,0.00005817529,0.0004707159,0.01574484,0.0001086951,0.001420784],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001715042,"threshold_uncertainty_score":0.006786346,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008316176747601777,"score_gpt":0.2447954976825634,"score_spread":0.2364793209349616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}