{"id":"W4391898696","doi":"10.1093/g3journal/jkae020","title":"High-density genetic linkage mapping in Sitka spruce advances the integration of genomic resources in conifers","year":2024,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Genome British Columbia; University of Oxford; Génome Québec; Natural Resources Wales; Genome Canada","keywords":"Biology; Linkage (software); Evolutionary biology; Computational biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002774259,0.0002519488,0.0002826154,0.0001727761,0.00007688833,0.0000469008,0.0003155375,0.0001544234,0.00001748012],"category_scores_gemma":[0.000008860322,0.000193047,0.0001063391,0.0002766924,0.0001875689,0.000005060185,0.0002470618,0.0001586847,0.00001396498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004238457,"about_ca_system_score_gemma":0.00008714612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001393312,"about_ca_topic_score_gemma":0.001259541,"domain_scores_codex":[0.9984108,0.0001101587,0.0004959837,0.0004789372,0.0001640519,0.0003400917],"domain_scores_gemma":[0.9993482,0.00004352164,0.0001004439,0.0004002313,0.00006426581,0.00004338444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002918619,0.00003060304,0.03016879,0.0001177769,0.00006409171,0.00001619238,0.001417759,0.005746306,0.5711748,0.00005337068,0.00005642858,0.3911247],"study_design_scores_gemma":[0.00109073,0.0005124405,0.3896829,0.0002886218,0.0001098679,0.00005276422,0.004487993,0.00231705,0.267292,0.0007683655,0.3323481,0.001049243],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5755648,0.4233605,0.0003895205,0.0001256419,0.0002442246,0.0001987844,0.00001793835,0.000008218071,0.00009043231],"genre_scores_gemma":[0.8093827,0.1882818,0.001646889,0.00007403402,0.0002834926,0.00002253486,0.00002818529,0.00002884801,0.0002514946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3900754,"threshold_uncertainty_score":0.7872229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01077482563186662,"score_gpt":0.2367927874859509,"score_spread":0.2260179618540843,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}