{"id":"W4391929110","doi":"10.1101/2024.02.14.580266","title":"Adaptive diversification through structural variation in barley","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of British Columbia; International Development Research Centre; Agriculture and Agri-Food Canada","funders":"Japan Society for the Promotion of Science; Biotechnology and Biological Sciences Research Council; Agriculture and Agri-Food Canada; Japan Science and Technology Agency; Directorate for Biological Sciences; Vetenskapsrådet; King Abdullah University of Science and Technology; Bundesministerium für Bildung und Forschung; Genome Prairie; Rural and Environment Science and Analytical Services Division; Svenska Forskningsrådet Formas; Deutsche Forschungsgemeinschaft; Ministry of Agriculture - Saskatchewan; Genome Canada; Bundesministerium für Ernährung und Landwirtschaft; Kungliga Fysiografiska Sällskapet i Lund; University of Minnesota","keywords":"Biology; Domestication; Powdery mildew; Locus (genetics); Structural variation; Hordeum vulgare; Genetics; Mildew; Quantitative trait locus; Genetic variation; Genome; Gene; Evolutionary biology; Botany; Poaceae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002499712,0.0003023492,0.0004588875,0.000904267,0.0002998027,0.0005785796,0.000231335,0.0002906329,0.0008389533],"category_scores_gemma":[0.0005932426,0.0002786113,0.0005104226,0.001670877,0.0002330183,0.0003874314,0.0005684328,0.0003493775,0.0003759653],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005667493,"about_ca_system_score_gemma":0.0002621573,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001885793,"about_ca_topic_score_gemma":0.003005911,"domain_scores_codex":[0.9997622,0.00001365884,0.00001743374,0.0001344665,0.00003812384,0.00003412228],"domain_scores_gemma":[0.9997447,0.00005057904,0.00006919364,0.00005536652,0.00003356471,0.00004651057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007913166,0.00003145183,0.03041985,0.0002785053,0.0002130165,0.0004434517,0.0003319289,0.001668503,0.9366416,0.0006548999,0.0005050626,0.02802043],"study_design_scores_gemma":[0.00008244362,0.0002807568,0.8561074,0.0000800569,0.0002882479,0.001933592,0.0004554864,0.006454627,0.09984323,0.004438225,0.02994661,0.00008931921],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839274,0.001027017,0.004385738,0.00006028512,0.00002198145,0.00001621319,0.009105559,0.0003211463,0.001134704],"genre_scores_gemma":[0.961822,0.0009784998,0.009777545,0.0001383902,0.00003067782,0.00004765352,0.0256625,0.0002922508,0.00125047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001885793,"threshold_uncertainty_score":0.004112065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02268419209335209,"score_gpt":0.214851274304553,"score_spread":0.1921670822112009,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}