{"id":"W4391944282","doi":"10.1038/s41598-024-54269-5","title":"A comparative study of the bacterial diversity and composition of nursery piglets’ oral fluid, feces, and housing environment","year":2024,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo; National Institute of Food and Agriculture; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; Hatch; U.S. Department of Agriculture","keywords":"Firmicutes; Feces; Biology; Proteobacteria; Veillonella; Microbiology; Alpha diversity; Bacteroidetes; Streptococcus; Beta diversity; Veterinary medicine; Bacteria; Zoology; 16S ribosomal RNA; Species diversity; Ecology; Species richness; Medicine; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004924374,0.0003428254,0.0004209763,0.0006419225,0.0002850425,0.0003983667,0.0001460998,0.0002717048,0.0005624203],"category_scores_gemma":[0.0005340465,0.0001966278,0.0003003379,0.0004427078,0.0003029483,0.000281729,0.0002224503,0.0001970473,0.0001875975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002194866,"about_ca_system_score_gemma":0.0002934285,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00264403,"about_ca_topic_score_gemma":0.00509149,"domain_scores_codex":[0.9996501,0.00005389087,0.0000265581,0.0001437437,0.00006844544,0.0000572759],"domain_scores_gemma":[0.99963,0.00006768467,0.0001136796,0.00003125905,0.00008695708,0.00007039917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008395846,0.0002792099,0.6223103,0.0001365324,0.0001034018,0.0008357094,0.001382557,0.00009550379,0.3481274,0.00005002912,0.0001016659,0.02573805],"study_design_scores_gemma":[0.000003468591,0.0008171258,0.9936033,0.000008792612,0.00002860177,0.0002770145,0.0004797619,0.0001142493,0.004333393,0.00001187974,0.0003157694,0.000006676638],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993427,0.00009606679,0.0002277209,0.000006548322,0.000003299304,0.000005518554,0.0001036561,0.000002164005,0.0002121823],"genre_scores_gemma":[0.9974309,0.0002481827,0.001206951,0.00003210735,0.000006868973,0.00002425824,0.0004575546,0.000004815375,0.0005883301],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00264403,"threshold_uncertainty_score":0.005257249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02882519292220196,"score_gpt":0.2744839746438033,"score_spread":0.2456587817216013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}