{"id":"W4392044958","doi":"10.1128/jcm.01687-23","title":"Clinical validation of loop-mediated isothermal amplification for the detection of <i>Escherichia coli</i> sequence type complex 131","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Canadian Institutes of Health Research; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Loop-mediated isothermal amplification; Escherichia coli; Microbiology; Biology; Enterobacteriaceae; Medicine; Gene; Genetics; DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001676632,0.00009465667,0.0004458101,0.00006298031,0.00002401488,0.00001286971,0.0001505536,0.000277875,0.00003266038],"category_scores_gemma":[0.0007647795,0.00006316207,0.0003400779,0.0002313403,0.0002261948,0.00007091364,0.00001195168,0.0004257954,0.00001006161],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001907832,"about_ca_system_score_gemma":0.0000547954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003910377,"about_ca_topic_score_gemma":0.000003618834,"domain_scores_codex":[0.9978566,0.0001781593,0.001677376,0.0001188146,0.00004944955,0.0001196259],"domain_scores_gemma":[0.9968695,0.002236073,0.0004021954,0.0001247831,0.0003193718,0.00004808571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002302914,0.00005435486,0.0003025763,0.00008965759,0.0002030241,5.9044e-7,0.00001235539,0.0006805351,0.9734062,0.00006522961,0.0004986336,0.02445653],"study_design_scores_gemma":[0.003623127,0.006357252,0.04081137,0.0004883455,0.001239221,0.0001800138,0.0001603426,0.2854943,0.4809917,0.001434741,0.1786259,0.0005935976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9231557,0.000677249,0.0729999,0.0004096242,0.002484327,0.0001721866,0.00004214585,0.00002910532,0.00002980725],"genre_scores_gemma":[0.9978216,0.0007381774,0.0008537784,0.0000838308,0.0004555142,0.000001366687,0.00001057045,0.00001583957,0.00001933586],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4924145,"threshold_uncertainty_score":0.2575674,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0889823741972007,"score_gpt":0.3641541657472357,"score_spread":0.275171791550035,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}