{"id":"W4392049994","doi":"10.7554/elife.94502","title":"Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2","year":2024,"lang":"en","type":"article","venue":"eLife","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"NODAI Genome Research Center, Tokyo University of Agriculture; Canadian Institutes of Health Research; Mitsubishi Foundation; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Tokyo University of Agriculture; Takeda Science Foundation","keywords":"Retrotransposon; Genomic imprinting; Imprinting (psychology); Biology; Genetics; Lineage (genetic); Gene; Computational biology; Genome; Transposable element; DNA methylation; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000181291,0.0001122186,0.0001140622,0.00009396547,0.00002863248,0.00003695212,0.0001021054,0.0001175759,0.00002110185],"category_scores_gemma":[0.00001846059,0.0001190352,0.00006824882,0.0001255306,0.00002890676,0.00001676524,0.00001496308,0.00008685854,0.000004146566],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001533737,"about_ca_system_score_gemma":0.00004551707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001921797,"about_ca_topic_score_gemma":0.00004360618,"domain_scores_codex":[0.999033,0.00005003441,0.0003309227,0.0003033494,0.0001102688,0.0001724158],"domain_scores_gemma":[0.999662,0.000005752158,0.00005241531,0.0001675128,0.00007309249,0.0000392027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001621066,0.00002759773,0.01757776,0.00006258951,0.000008177421,0.000001091075,0.0004859251,0.0004776163,0.974612,0.00005200905,0.000004141232,0.006674893],"study_design_scores_gemma":[0.0002368929,0.0002530595,0.3993413,0.00006730574,0.000008161182,0.000006383066,0.0002198096,0.002337825,0.5967784,0.00001032171,0.0006154432,0.0001250509],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930927,0.001985293,0.004338251,0.00004166819,0.0002570248,0.0001514849,0.00001253115,0.0000205017,0.000100588],"genre_scores_gemma":[0.9976668,0.000567031,0.001283226,0.00003424525,0.0002027283,0.000008492777,0.0001866708,0.00002328155,0.00002748687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3817636,"threshold_uncertainty_score":0.4854114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0193719705543862,"score_gpt":0.2651506837435218,"score_spread":0.2457787131891356,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}